Pseudomonas protegens Pf-5: PFL_1191
Help
Entry
PFL_1191 CDS
T00249
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl03030
DNA replication
pfl03430
Mismatch repair
pfl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFL_1191 (dnaE)
03430 Mismatch repair
PFL_1191 (dnaE)
03440 Homologous recombination
PFL_1191 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfl03032
]
PFL_1191 (dnaE)
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_1191 (dnaE)
Enzymes [BR:
pfl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PFL_1191 (dnaE)
DNA replication proteins [BR:
pfl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PFL_1191 (dnaE)
DNA repair and recombination proteins [BR:
pfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PFL_1191 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AAY90478
UniProt:
Q4KHG1
LinkDB
All DBs
Position
1362627..1366148
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKALAGMGMPAVAVTDQNNMCSLVKFYKTSMGAG
IKPICGADLWLSNKDPDNPLSRISLLVMNAVGYRNLTELISRGFIDGQRNGQIIIEREWV
AEAAEGLIMLSAAKEGEIGMALIAGDLEVAETLAREWMAVFSERFYLEVQRTNRPNDEEQ
LHAAVALADKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSKNYSDQQYLK
SAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPDYPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYDGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRIMKLRLDAPDVNTSEFKFTVNDEGRIVYGLGAI
KGVGEGPVEAITEAREAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPHFFDEP
KAYQANIDQNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGVFVDEDADVYANHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTNLAESLRLKIHSDALKGDQLRWLGDLFKRHRGACPITMEYTRDDAKAL
LQFGENWRIDPADSLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctgcgcctgcacactgaatattccctggtcgacggtctg
gtgcggatcaagccgctggtcaaggcgctggccggcatgggcatgccggcggtggcggtc
accgaccagaacaacatgtgttccctggtcaagttctataaaaccagcatgggggcgggg
atcaagccgatctgcggcgccgacctgtggctgtcgaacaaggacccggataaccccctg
agccgcatcagcctgctggtgatgaacgccgtgggttatcgcaacctgaccgagctgatt
tcccgcggcttcatcgatggccagcgcaacggccagatcatcatcgagcgtgagtgggtg
gcggaggccgcggaaggcttgatcatgctctcggcggccaaggagggcgagatcggcatg
gccctgatcgccggcgatctcgaggttgccgagaccctggcccgggagtggatggccgta
ttctccgagcgcttctacctggaagtgcagcgtaccaaccgccccaacgacgaagagcaa
ttgcacgctgcggtggccctggccgacaagatcggcgcgccgctggtggctaccaacgac
gtgcgtttcatcaagcaggaagacttcgaagcccacgaaacccgggtttgcatcggtgaa
ggccgggccctggacgatccgcgccgctcaaagaactacagcgaccagcagtacctgaaa
agcgccgaggaaatggccgagctgttcagtgacctgcccgaggcgctggaaaacactgtc
gagatcgccaagcgctgcaacatcgaggtcaagctgggcaagcacttcttgcctgactac
ccgattcccgatggcatgaccatcgatgagtattttcgcaaggtttccttcgacggcctg
gaagagcgcctcagcgtgctgctgcccaaggacaccaccgaggactacgaggccaagcgt
caggtctacgtcgaccggctgaatttcgaactggatatcatcatccagatgggcttcccc
ggttacttcctgatcgttatggactttatccagtgggccaagagcaacggcgtaccggta
ggtccgggccgggggtcgggtgccggttccctggtggcctatgtgcagaagatcactgac
ctcgatccgctggaatacgacctgctgttcgaacgtttccttaacccggaacgggtctcc
atgcccgacttcgacgtcgacttctgcatggacggtcgcgaccgggtgatcgactacgtg
gccgagaaatacggccgcaacgcggtgagccagatcatcaccttcggttccatggcggcc
aaggcggtggtccgtgacgtggcgcgggtgcagggcaagtcctacggcttggccgaccgt
ctgtcgaagatgatccccttcgaagtcggcatgaccctggaaaaagcctacgagcaagag
gagatcctgcgggacttcatcaaggtcgatgaagaggcggcggaaatctgggagatggcg
cgcaagctcgagggcgtggtgcgtaacgtcggcaagcacgccgggggtgtggtgatcgcg
cccaccaagctcaccgacttctcgccgatctactgcgatgaagaaggcggcggcctggtg
acccagttcgacaaggatgacgtcgaggctgctggcctggtgaagttcgacttcctcggt
ctgcggaccctgaccatcatcgactgggcactgaaaaccattaaccgcgaccgcgccaag
gtcggcgaggaaccgctggatatcgcttttatcccgctggacgacaagccgacctatagc
ctgttgcagaaagcagaaaccaccgcggtattccagcttgaatcccggggcatgaaggag
ctgatcaagaagctcaagcccgactgcctggaagacctgatcgcactggtggccctgttc
cgtccggggccgctgcaatcgggcatggtggatgacttcatcaaccgcaagcacggccgc
gccgaactggcctacccgcacccggactatcagtacgacggcctgcagccggtactggca
ccgacctacggcatcatcctgtaccaggaacaggtgatgcagattgcccaggtcatggcc
ggctacaccctgggcggtgcggacatgctgcgtcgagccatgggtaagaaaaagcccgaa
gagatggccaagcagcggggcggcttcattgaaggttgcgccagcaacaacatcgatgca
gacctggcgggcaacatcttcgacctggtggaaaagttcgccggctacggcttcaacaaa
tcccactccgccgcctacggcctggtgtcgtaccagaccgcctggctcaaggcgcactac
ccggcgccgttcatggcggcggtactctccgcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcggatcatgaagttgcgcctcgacgcgccggacgtgaacacc
tccgagttcaagttcacggtgaacgacgaaggtcgcatcgtctacggcctgggggcgatc
aagggcgtcggtgaggggccggtggaagccatcaccgaagcccgcgaggcagggcctttc
aaggatctgttcgatttctgcgccagggtcgacctcaagcgcatcaacaagcggaccctg
gacggcttgattcgaagcggcgccctggaccgcctggggccgcacttcttcgatgagccc
aaggcctaccaggccaatatcgaccagaaccgcgccgtgctgctggcggccatggaagaa
gcgatcaaggctgcggagcagaccgcccgtacccacgacagtggccacgccgacctgttc
ggcggggtcttcgtcgatgaggatgcggatgtctacgccaaccatcgcaaggccaaggaa
ctgaccctcaaggaacgcctgaaaggcgagaaagataccctggggctgtacctgaccggg
cacccgatcgacgaatacgaaggcgagatccgtcgtttcgcccgccagcgcatcatcgac
ctgaagccggcccgggatacccagaccgtggccggcatgatcatcgccctgcgggtgatg
aagaacaaaaagggcgacaagatgggcttcatcaccctcgacgaccgctcggggcggatc
gaagcctcgctgtttgccgatgcgttccactcggcgcagtcgctgctgcagaccgacgcc
atggtggtggtggagggcgaggtcagcaacgacgacttctccggcggcctgcgcctgcgg
gtcaagcgggtgatgagcatggaggatgcgcggaccaacctggcggaaagcctgcgcctg
aagatccacagcgatgccctgaagggcgatcagctacgctggctgggtgatctgttcaag
cgccaccgcggcgcatgcccgatcaccatggagtacacccgggatgacgccaaggccctg
ctgcagtttggcgagaactggcggatcgatccggcggatagcttgattcaagccctgcgt
gaccagttcgggcgagacaacgtcttcctccaataccgttga
DBGET
integrated database retrieval system