Peribacillus frigoritolerans: L8956_14570
Help
Entry
L8956_14570 CDS
T08180
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfri
Peribacillus frigoritolerans
Pathway
pfri03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L8956_14570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfri03400
]
L8956_14570
Enzymes [BR:
pfri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L8956_14570
DNA repair and recombination proteins [BR:
pfri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L8956_14570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ULM95108
LinkDB
All DBs
Position
3095135..3096982
Genome browser
AA seq
615 aa
AA seq
DB search
MKPMLPTYYPEAPNSKDWRYEVKYDGFRAILTIDSDTISISSRNEKELSPQFPEIIAYIK
ELDLEEYLPLQLDGELVWLTNQAKADFFQIQWRGRLGKQSLISENARFSPCRFIAFDLLR
ISGKDIADKPMVERRELMLNMGGKLGLPMPPDPNDKALIQLIESFDVLESALNKVTLLDG
EGIVAKEIRGAWQEGRRTTSWIKVKNWKTVSCFITALHKENGYVSLAVFKEGAVTKIGSV
KNGLSARDKSILHQLIKQNASDEDTQFFYIHPSICIEVQFLHVYEENELREPQFSQWLLQ
TSPDECTWEKFVLGQYTFPDTVQITSRDKPLWETEGKQVVKLEYLHYLREVSAFFLPFLK
DKLLTTIRYPHGTLDKERFFQKNKPDYAPDFIKTFMDEDIEYMLCNDIETLLWFGNQLAL
EFHAPFQKAGKTRPDEIVLDLDPPSIEYFSFAVKAAQEIKKVMESLRIKAFVKTSGNKGL
QIHIPLPEDRFTYQETRIFTDFLGDYLTSSNPNDFTTERMKINRHNRLYLDFVQHSEGKT
IILPYSPRGNSFAGVATPLFWEEVNESLQLKDFTIETIPNRIKRDGCAFMDYRQVDNGPA
FLEVLSFLKQKKTNN
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgctgccaacatattaccccgaagcccccaactccaaggattggcgttat
gaagtcaaatatgacggctttagggctattttaacgatagactccgataccataagcatt
tcaagtcggaacgagaaggaattatcaccacaattcccagaaatcattgcttacatcaaa
gaactggacctggaagaatatctcccgcttcagttggatggagaattggtctggcttacg
aatcaggcgaaagcggacttttttcaaatacagtggcgaggccgccttgggaaacaatcc
ttaatttcagaaaatgcccgtttttccccatgtcggtttatagcgtttgacctgcttcgc
atcagcggaaaagacatagcagataaacctatggtggaacgaagggaattgatgttgaat
atggggggaaagctcggtcttcctatgcctcctgatcccaacgataaggctttgatacaa
ttaatagagagttttgacgttttggaaagtgccttgaataaggtcaccttgttagatggc
gaagggattgtcgccaaggaaattcggggtgcttggcaagaaggaagacgtacaacatct
tggattaaggtgaaaaattggaagaccgtttcttgtttcatcacagcattgcacaaagaa
aatggctacgtttccctcgcagtattcaaagaaggtgccgtaacgaaaatcgggagtgtc
aaaaatggactgagtgctcgagataaaagtatattgcatcaattgatcaaacaaaatgca
tcagatgaagacacacaatttttttatatccatccatccatttgcattgaagttcaattc
ttgcacgtatatgaggaaaatgaattgcgtgaacctcagttttcccagtggcttttacaa
acttctcccgacgaatgtacctgggagaaattcgtgctagggcaatatacatttccagat
actgtacaaataacttccagggataaacctctttgggaaacagaaggtaaacaggtggta
aaattagaataccttcattatttacgggaggtttcagctttcttcttacccttcttgaag
gataagcttcttaccacgatccgctatcctcatggaactttggataaagaaagatttttc
caaaaaaacaaacctgattatgcgccggactttattaaaacgttcatggatgaggatatc
gagtatatgctgtgtaacgacattgaaactctcctttggtttggtaatcaacttgcattg
gaatttcatgccccatttcagaaagccggtaaaacaagacccgacgaaatcgtcctggac
ttggatcctccttccatcgaatatttctcctttgcggtaaaggctgcacaggaaataaaa
aaggtgatggaatcattaaggattaaagcttttgtaaaaacttcaggtaacaaaggactg
caaattcacatccctctgcctgaagacagatttacttatcaggagacacgtatattcact
gactttctaggtgattatttaacaagttccaatccgaatgattttacaacggaaagaatg
aaaataaatcggcataatcgactttacttggactttgtgcagcatagtgaaggaaaaacc
atcattcttccttattccccacggggaaattctttcgctggtgtggctacacctttattt
tgggaggaagtgaacgaaagtctccagttaaaggactttacgattgaaaccataccaaac
agaataaaaagggacgggtgtgcgtttatggattaccgacaggtagataatggaccagcc
tttttggaagtattgtcgttccttaaacagaaaaagaccaataactaa
DBGET
integrated database retrieval system
