Pestalotiopsis fici: PFICI_11394
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Entry
PFICI_11394 CDS
T04924
Name
(RefSeq) TFIIH basal transcription factor complex p47 subunit
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03022
Basal transcription factors
pfy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PFICI_11394
09124 Replication and repair
03420 Nucleotide excision repair
PFICI_11394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfy03021
]
PFICI_11394
03400 DNA repair and recombination proteins [BR:
pfy03400
]
PFICI_11394
Transcription machinery [BR:
pfy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PFICI_11394
DNA repair and recombination proteins [BR:
pfy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PFICI_11394
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Motif
Other DBs
NCBI-GeneID:
19276407
NCBI-ProteinID:
XP_007838166
UniProt:
W3WUJ6
LinkDB
All DBs
Position
Unknown
AA seq
456 aa
AA seq
DB search
MADSDGEYHGASDDELQVNSSHNARGKSKKDGRKTQAAWENVTRTWDIVEENEDGTIKRV
ETAEAKKRARLMKDTTPLQRGIIRHLVLVLDMSFAMAEKDLLPNRHELTMAYAGEFVREY
FEQNPISQLAILGMRDGIAIRISDMSGNPADHLERLTRWTKQEPQGNPSLQNALEMCRGA
LYHTPSHGTREVVIVYGALMSSDPGDIHETISAVIKDRIRVSVVGIAAQVAICAELCAKT
NGGDDSSYTIALHEQHLRELLLDVTTPPATRTTEQSNASLLMMGFPSRTITTGETISYCA
CHNRPNREGYTCTRCSSRVCRLPAECPGCGLTLILSTHLARSYHHLFPLRNWVDVPWSEA
RKSTACYACLSAFPQYDKKHVEQHGAPIGLSESGRYACEVCGNHFCIDCDLFAHEVLHNC
PGCQSDTRGSAMSSQELETNGDANGRMNGTAMDIDP
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggccgactccgacggcgaataccatggcgcctccgacgatgagctgcaggtcaactct
tcccacaatgcgcgcggcaaatcaaaaaaggacgggcgcaagacccaagcggcatgggag
aacgtaacgagaacatgggacatagtcgaggagaacgaggatggaaccatcaagcgagtc
gaaacggccgaagcaaagaagcgcgcgcgcctgatgaaggataccacccctctgcagcgc
ggcatcatacgtcatcttgtcctggtcctcgacatgtcctttgccatggcagagaaggac
ctgttgcccaacagacacgagctcacaatggcatatgcgggggagtttgtcagggaatat
tttgaacaaaatccaatctcccaactggccatcctcggcatgcgcgatggtattgccatc
agaatcagcgatatgagcggcaatcccgccgatcacctggaaaggttgacccggtggaca
aagcaggagccgcaggggaacccgagtctacagaatgccctggaaatgtgtcggggtgcg
ttatatcacacaccatcccatggcacaagggaagttgttatagtctacggtgccctcatg
tccagtgaccctggtgacattcacgagaccatcagcgccgtcatcaaggacaggatccgt
gtctctgtcgtcggtattgctgctcaagtagccatttgcgcagagctatgcgccaagacc
aatggaggagatgattctagttacactatagcactgcacgagcagcatcttcgcgaattg
ctgctcgatgtcacaacaccgccagccactcgaacgacggagcaaagcaatgcaagtctg
ctcatgatgggcttcccatcgagaacaatcaccacgggcgagaccattagctattgcgcc
tgccacaacaggccaaaccgggagggttatacctgtacgcggtgcagctcgcgtgtttgt
cgtttgccggccgagtgtcccggttgcggcctaacactcattctctccacccatcttgcg
cgatcatatcaccatctgttccctctacggaactgggtagatgtgccttggtcggaagcg
cgcaagtcgacggcgtgttatgcctgtctcagtgccttcccccaatacgacaagaaacac
gttgaacaacacggtgcccccattggcttaagcgaatccggaaggtatgcctgcgaggtt
tgcggaaatcatttttgtatcgactgcgatctcttcgctcacgaggtgttacacaattgc
cccggatgtcagagtgacacacggggctcggctatgtctagtcaggagctggagacgaac
ggcgacgccaacggccgtatgaatggtacggccatggacattgatccttga
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