Photobacterium ganghwense: FH974_02925
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Entry
FH974_02925 CDS
T07175
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FH974_02925 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgh03400
]
FH974_02925 (recD)
Enzymes [BR:
pgh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FH974_02925 (recD)
DNA repair and recombination proteins [BR:
pgh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FH974_02925 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
AAA_11
Helicase_RecD
UvrD-helicase
Viral_helicase1
AAA_22
SLFN-g3_helicase
DEAD
nSTAND3
CbiA
AAA_16
AAA_28
AAA_33
TrwB_AAD_bind
Imm71
MukB
SRP54
T2SSE
ResIII
UvrD_C
NTPase_1
PhoH
Motif
Other DBs
NCBI-ProteinID:
QSV14610
LinkDB
All DBs
Position
1:589914..592040
Genome browser
AA seq
708 aa
AA seq
DB search
MLNRLEKLARQGHLRALDYQFAKFVCQSAGRLDDALLALASALTSYELGQGHVCLMLDKV
DVQRLFGLPTEHSQQLLGDVASPDSWVVQLADSPAVSDGSAPTPLVLAQNRLYLNRYWQF
EQRVAGYLRHAAASAADHMVVDQARADSASQALAAPMAAQLNELFARDYRFLHQALSALD
GEANTPQARQQEVCDKLDVVAPELLDWAAIDQVLQSATDVAALARLDTLVPLAACLNWQK
VAAAVALTQQFAVISGGPGTGKTTTVAKLLAALVAQALHRDERDEQGNLVMPDIKLVAPT
GKAAARLTESIGAAVKSLPVGENVKSHIPTQSSTIHRLLGAIPNRVGFRHNRDNPLHLDV
LVVDEASMVDLPMMARLLESLPPHAKLILLGDRDQLASVEAGAVLGDICAFAGQGYSQTQ
SQQLSALTGFRFAAGNVQSVVNDSLCMLQKSYRFHAQSGIGQLAKAINSGQPSQVEKVWQ
QGFRDISFYPLSSESYQTLLNRTVTFYYDYLDAIAERQTPDVVLAQFAKVRLLCALREGD
FGVTGLNQRIERMLEKNNKIKCGSEDVWYEGRPVMITQNDHGLGLYNGDIGITMLEAEPE
AGSEPRLRVYFEMPDKTIRSVLPSRLPDHETVYAMTIHKSQGSEFADTLMVLPPDYSPIL
TRELIYTGVTRAKSRLALFATPEVVHRAVRLRTERASGLATLLSVPQR
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaccgcctagaaaaactggcccggcagggtcacctgcgggcgctggattatcag
tttgccaagtttgtctgccaatccgccgggcggctggatgatgcgctgttggcgctggcg
tcagccctgaccagctacgagctgggtcaggggcatgtctgcctgatgctggataaggtg
gatgtccagcggttgtttggtctgccgaccgaacacagccagcaactgctgggggacgtg
gcttcgcctgactcctgggtggtacagctggccgattcaccggccgtctctgacggcagc
gcgccgacaccgctggtgttggcgcaaaaccgtctttacctcaatcgatactggcagttt
gagcaacgtgtggccggttatctgcgccatgccgctgccagtgcggcagatcacatggtg
gtagatcaagcgcgggctgactcagcctcgcaggctttggctgcgccaatggcggcacag
ctgaatgagttgtttgcccgggattaccgttttttgcatcaggcactgagcgcgctggac
ggggaggcgaatactccacaggcgcgtcagcaggaagtttgcgacaaactcgatgtggtc
gcccccgaattgcttgactgggcggcgattgatcaggtgttgcagtccgctactgacgtg
gcggcgctggcccggctggatactttagtgccgctggctgcctgcctgaactggcagaaa
gtggcggcggcggtggcgttgacccagcaatttgcggtgatttccggcggaccgggtact
ggtaaaactaccaccgttgccaaactgctggcagcattggtggcgcaggcgctgcaccga
gatgagcgggacgaacagggcaatctggtgatgccggatatcaagttggtggcgccgacg
ggcaaagcggccgcccgcctgaccgagtccatcggtgctgcggtgaaatcgttgccggtc
ggtgagaatgtcaaatctcatatcccgacgcagtcgagtacgattcaccgattgctgggc
gcgattccgaaccgggttgggtttcgtcacaaccgtgataacccgctccatctggatgtg
ctggtggtggatgaagcctcgatggtggatttgccgatgatggcacggctgcttgaatcg
ctgccgcctcatgccaaactgattctgctcggagatcgggatcagctggcttcggtcgag
gccggcgcggtgttgggggacatctgtgcgtttgccggacagggctacagccagacccag
agtcagcagctgagtgcccttaccggtttcagatttgcggcgggaaacgtgcagagtgtg
gtgaacgacagtttgtgtatgctgcaaaaaagttaccgtttccatgcccagtccgggatt
gggcagttggcaaaggccataaacagcggccagccgtcgcaggtcgaaaaagtctggcag
cagggatttcgtgatatcagcttttatccgctgagtagcgagagctatcagacgctgctc
aaccggacggtgactttttattacgactacctggatgccatcgctgagcgccagactccg
gatgtggtgttggcgcagttcgccaaagtgcggttgctgtgcgccctgcgcgaaggggac
ttcggggtgaccggcctgaatcagcgcatcgaacggatgttggagaagaacaacaaaatc
aagtgcggctccgaagacgtctggtacgaagggcgcccggtgatgatcacccagaatgat
cacggtctggggctttataacggtgatatcgggatcacgatgctggaggccgagccggag
gcgggcagtgaaccgcgtttgcgggtgtattttgagatgccggataaaacgattcgttcg
gtgttgccaagccgcttgccggatcatgagacggtatatgccatgaccatccacaaatcg
cagggctcggagtttgcggataccctgatggtactgccgccggattacagcccgatcctg
acccgtgaactgatctataccggggttacccgggcaaaaagccgcctggctctgtttgcg
acgccggaagtggtgcaccgggcggtgcggctgcgtaccgaacgggcaagcgggctggcc
actttgctgagtgtgccccagcgataa
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integrated database retrieval system
