Panacibacter ginsenosidivorans: FRZ67_12365
Help
Entry
FRZ67_12365 CDS
T06131
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pgin
Panacibacter ginsenosidivorans
Pathway
pgin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FRZ67_12365 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgin03400
]
FRZ67_12365 (mfd)
Enzymes [BR:
pgin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FRZ67_12365 (mfd)
DNA repair and recombination proteins [BR:
pgin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FRZ67_12365 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEC70216
UniProt:
A0A5B8VHY1
LinkDB
All DBs
Position
complement(2929596..2933006)
Genome browser
AA seq
1136 aa
AA seq
DB search
MNLSALLEQYQQSPRLFQLTDRLLFADTQKIFLKNLQGSSAEFVVSSVFMHTNTQQLNHL
VVLNDAEDAAYFHNTLENLTSALDLFYFPASFKNRKNFKLLNSSHVMLRTETLTRLAAGG
NKKIIVTYPEALFEKVVLPKTLSSNIISIKTNDTINLESLLELFVMYGFTRTDFVYEPGQ
FALRGGILDIYSFGNEKPYRVELFGNDVDSIRIFDPETQLSERKLLQVSIIPNIETQFDS
GEKVSLLEFLPENTIVWLKDWDVIKEKIFLQEEDLEGFIALLDDGYRMQNSDEDDDTQVV
KEIKWDDFVKHDVIEKQLASRHIVEFGFKPQLATFEIEFATKPQPAFNRQFDLLIKDLKA
HESAKYSIYIFAEQAKQLERLNSIFNDLNTEIQFVPVATSIHEGFIDEDLKVICYTDHQI
FQRYHKYRVKQAYNKNKALTLKTLRDLQPGDFVTHIDHGVGTYSGLQKLEVNGKLQEAVR
IIYKDSDILYVNINSLHKISKYTGKEGTIPKINKLGSDVWNRLKEKTKAKVKEIAFDLIK
LYAQRKAQQGFAHSPDNYMQTELEASFIYEDTPDQSKATADVKKDMESPSPMDRLVCGDV
GFGKTEVAIRAAFKSCVDGKQAAVLVPTTILAFQHYKTFSDRLKDFPVTVDYVNRFKSAK
EKKETLKKLEEGKIDIIIGTHGLLGKEVKFKDLGIMVIDEEQKFGVGHKEKLKTLKTNVD
CLTLTATPIPRTLQFSLMGARDLSIINTPPPNRQPIQTEVQVFNPDFIRDAIYYETERGG
QVFFIHNRVQGLGEMSGLIQSLCPDLSIGYAHGQLEGHELEERILDFIDKKYDVLVCTNI
VESGVDIPNVNTIIVNNAHHFGLSDLHQLRGRVGRSNKKAFCYLLAPAMSTLPTDSRKRL
QTLEQFSDLGSGFQIAMRDLDIRGAGNMLGGEQSGFMAEIGFEMYQKILDEAIRELKRTS
FKDLFKEEISKQDDYVSDCTIDTDLEILIPDDYVESITERLSLYTRLDSCETEEDLVAFH
AEMLDRFGPMPKAVEDLFTTVRCRWLAVDLGFEKMSLKSETLRCYFINRNDSPYFESDIF
KNTLQYLQTGTNKARLKQVAKNFLLVVDDIKGMEAMQRFLKLMHNAVIRKKEVMEA
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgaacttaagtgcgttgctggaacagtatcaacaatctccccgtctttttcagctgacg
gacaggcttctttttgccgatacccaaaaaatctttctcaaaaatttacagggcagcagt
gcagaatttgtggtaagcagtgtgttcatgcatactaatacgcagcaactaaatcatctt
gttgttttgaacgatgcggaagatgcggcttattttcacaacacgctggagaatcttacc
agtgcgttggacctgttttattttccggcatcattcaagaacaggaagaattttaaactg
ctcaactcttcgcatgtaatgctacgtacggaaacacttacgagacttgctgccggcggt
aataagaagatcattgttacttacccggaagcactgtttgaaaaagttgttttgccaaaa
acacttagcagtaatattatcagtataaaaacaaacgacaccataaatctcgaaagtctt
ttggagttgtttgtaatgtatggttttacacgaacagattttgtgtatgaacctggccag
tttgcactgcgtggaggcatactggatatttattcttttggaaatgaaaagccttatcgt
gtagaattgtttggtaatgatgtggacagcatacgaatctttgatccggaaacacagctt
agtgaacgaaagcttttgcaagtaagcattataccaaatattgaaacacagtttgatagt
ggtgagaaagtttcattactcgaatttctccccgaaaacacgattgtgtggttaaaggat
tgggatgtaataaaagagaagatctttttgcaggaagaagacctggaaggttttatcgct
ttgcttgatgacggatatcgcatgcagaacagtgatgaagacgatgatacgcaggttgtg
aaagaaataaaatgggatgattttgtaaagcacgatgtgattgaaaagcaacttgcgtca
agacatattgtagagtttggatttaagccacaacttgcaacatttgaaatagagtttgct
accaaacctcaacctgcctttaaccgtcaattcgatttgctgataaaagacctgaaagct
catgagtctgcaaaatatagcatttacatttttgcagagcaggcaaaacaactggaaagg
ctcaacagcatcttcaatgatctcaatactgaaatacaatttgtacctgtcgcaacttct
attcatgaagggtttatagatgaagacctgaaagttatttgttatacagatcaccagata
tttcaacgttatcataagtatcgcgtaaaacaggcatacaacaaaaacaaagctcttact
ttaaaaacattacgtgatctgcagcccggagactttgttacgcatatagatcatggtgtg
ggtacttacagtggcttgcaaaaacttgaagtgaatggcaagctacaggaagccgtacgc
attatttataaagacagcgatatactttatgtaaatatcaactcgctgcataagatctca
aaatacacaggcaaagaaggaacgataccaaaaataaataagctgggtagcgatgtatgg
aacaggctgaaagagaagacgaaggctaaagtaaaggaaatagcattcgatctcatcaag
ctatatgcacaaagaaaagcgcaacaaggctttgcacattctccggataattatatgcag
accgaactggaagcttcttttatatatgaagacacaccggatcaaagtaaagcaacagca
gatgtaaaaaaagatatggaaagtccatcaccgatggatcgtcttgtttgtggcgatgta
ggttttggtaaaacagaagtagccattcgtgcagcatttaaaagttgtgtcgatggcaaa
caagctgctgtattggtaccaaccaccattcttgcatttcagcattataaaacttttagc
gataggttgaaagattttccggttaccgttgattatgtaaatcgtttcaaatctgcaaag
gagaaaaaagagactttaaagaaattagaagaaggcaaaatagatatcatcataggtact
catggtttgttgggtaaagaagtaaaattcaaagaccttggcatcatggtgattgatgaa
gagcaaaagtttggtgtaggtcataaagaaaagttgaaaacgttaaagacaaacgttgat
tgcttaacgctaacggcaacgccaattccacgtacactgcaattcagtttaatgggagca
agagatctcagtattattaatacaccgccaccaaaccgtcaacctatacaaacagaagta
caggtattcaatcctgatttcataagagatgccatctattatgaaacagaacgcggcggc
caggttttctttatacataaccgtgtacagggcctgggcgaaatgtctgggttgatacaa
agtctctgccccgatcttagcattgggtatgctcatgggcaacttgaaggtcatgaactg
gaagaacgaatccttgattttattgataaaaaatacgatgtattggtttgtaccaatatc
gttgaaagcggtgtggacattccaaacgtaaataccattattgtaaacaatgcacatcat
tttggattgagcgatctgcaccagttgcgtggccgcgttgggcgtagtaataagaaagca
ttttgttatttactcgctcctgcaatgagtacgttgccaactgattcccgtaaacgtttg
caaacactggaacagtttagtgatcttggaagcggctttcagatcgctatgcgtgacctt
gatatacgcggtgcaggcaatatgttaggtggtgaacagagtggttttatggctgagata
ggttttgaaatgtaccagaaaattcttgatgaagcaatacgtgaattaaaacgcacttca
ttcaaagatctttttaaagaagagatcagcaaacaggatgattatgtaagtgattgtacc
atcgataccgatctggaaattcttatccctgatgattatgtagaaagcattacagaacgc
ttatcgttatatacaagattggatagttgcgaaaccgaagaagaccttgttgcttttcat
gcagagatgctggatcgttttggtccaatgccaaaagctgtcgaagatctttttacaacg
gtacgttgccgctggctcgctgtagatcttggcttcgaaaaaatgagcctgaaatcagaa
accctgcgttgctattttattaacagaaatgattctccttattttgaatcagacatcttt
aaaaacactttgcaatatttacaaacaggtaccaacaaagcaaggttaaaacaggtagct
aaaaatttcctgttggttgtggatgatataaaaggcatggaagctatgcaaagatttctc
aagctaatgcataatgcagttataagaaagaaagaagtaatggaggcataa
DBGET
integrated database retrieval system
