Pseudomonas glycinae: AWU82_12005
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Entry
AWU82_12005 CDS
T06994
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pgy
Pseudomonas glycinae
Brite
KEGG Orthology (KO) [BR:
pgy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgy03032
]
AWU82_12005 (topA)
03400 DNA repair and recombination proteins [BR:
pgy03400
]
AWU82_12005 (topA)
Enzymes [BR:
pgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AWU82_12005 (topA)
DNA replication proteins [BR:
pgy03032
]
Prokaryotic type
DNA Topoisomerases
AWU82_12005 (topA)
DNA repair and recombination proteins [BR:
pgy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AWU82_12005 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AMQ84004
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All DBs
Position
3091850..3094480
Genome browser
AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKEKARKQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSEPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGST
VRFEVAREKGEAFKPLNEAQATAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARDYIETEFGKKYLPESPN
VYSSKEGAQEAHEAIRPSDANTTPAKLAGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVAAGDFELRAKGRILKFDGYTRVLPQITKPGDDDVLPDMAQGDVMKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAENPEAGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEILPHKDEIDPKYHFLCEAPQKDPDGLPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFFDGGKWTVEDKRPAKAKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggcaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagcctgccgccaagcgcggcaaggctgctgcgggcgaa
gcgccagcgctgtcgccgaaagagaaggcgcgcaagcagctggtctcgcggatgggagtc
gatcctgaacacggctggaaagccaagtacgagatccttccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgctgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggcggtgacgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgattcaggaagccttctcggag
ccgggcgaactcgacatcgatcgagtgaatgctcagcaggctcgtcgtttcctcgatcgc
gttgtgggctacatggtctcgccgctgctgtgggccaagatcgcccgtggcctgtccgcc
ggtcgcgtgcaatcggttgccgtgaagctggtggtcgagcgtgagcgtgagattcgtgcg
ttcaatccggaagagtactgggaagtgcatgccgatctcggcaccgccaaaggctcgacc
gtgcgtttcgaagtcgctcgcgagaaaggcgaagccttcaagccgctgaatgaagcgcag
gctacggctgcgctggagaagctcaagtcctccagctacagcatcgtcaagcgtgaagac
aaaccgaccagcagcaagccgtcggcaccgttcatcacttcgaccctgcaacaggccgcg
agcaaccgcctgggcttcggtgtgaagaagaccatgatgatggcacagcgtctgtacgaa
gccggctacatcacttatatgcgtaccgactcgaccaatctctcggctgatgccgtggcg
atggcgcgcgattacatcgaaaccgagttcggcaagaagtacctgccggaatcgccgaac
gtctacagcagcaaagaaggcgcacaagaggctcacgaagcgattcgtccttccgacgcc
aacaccacgcccgccaagctggccggcatggagcgtgacgctgagcgcctctacgagctg
atctggcgccagttcctggcttgccaaatgctgccggcgcaatatctgtcgaccaccgtc
agcgtcgctgccggcgacttcgagctgcgcgccaagggtcgcatcctgaagttcgacggt
tacacccgcgtgctgccgcaaatcaccaagcctggcgatgacgatgttttgcccgacatg
gcgcagggcgacgtgatgaagctgatcaagctcgatccgtcccagcacttcaccaagccg
ccggcccgttattcggaagccagcctggtgaaggaaatggaaaagcgtggcatcggtcgt
ccttcgacctacgcagcgatcatctcgaccattcaggatcgcggctacgtgaccctgcac
aaccgtcgtttctattcggaaaagatgggcgacatcgttaccgagcgtctgtcggaaagc
ttctcgaatctcatggactacggcttcaccgccggcatggaagagaacctcgatgacgtg
gcccagggcgagcgcgactggaaaaacgtgctggacgagttctacggcgacttcaagaaa
aaacttgaagtggctgaaaacccagaagctggcatgcgtgccaaccagccggtgatgacc
gacattccgtgcaccacttgcggccgtccgatgcagattcgtactgcctcgactggcgtg
ttcctcggctgctcgggctacagcctgccgccgaaagagcgctgcaaggccaccgtcaat
ctggtgccgggcgatgaaatcgcggcggacgacgaaggtgagtcggaatccctggtactg
cgcggcaagcaccgctgcccgatctgcagcacggcgatggacgcctacctgctcgacgag
aagcgcaagctgcacatctgcggtaacaacccggattgcgccggctacgagatcgaagag
ggcagctaccgcatcaagggctacgaaggtccgagcctggaatgcgacaagtgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaatccgacctgc
aagaacacccgcaagctgctgaagagcggtgacgcggcgccgccgaagatggatccggtg
aagatgcctgagctgaaatgcgaaaaggtcaacgacacctacattctgcgtgacggtgct
tccggcctgttcctggcggctagccagttcccgaaaaaccgcgagacccgtgctccgctg
gtgatcgagattctgccgcacaaggacgaaatcgatccgaagtaccacttcctgtgcgaa
gcgccacagaaggatccggatggcctgccagccgtgatccgctatagccgcaagaccaag
gagcaatacgttcagaccgaagtcgacggcaagccgactggctggaaagcgttctttgac
ggtggcaagtggacggtcgaggacaagcgtccggcgaaagccaaggcttga
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