Parasphingorhabdus halotolerans: HF685_10250
Help
Entry
HF685_10250 CDS
T07423
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
phao
Parasphingorhabdus halotolerans
Pathway
phao02020
Two-component system
phao02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
phao00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HF685_10250 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HF685_10250 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phao03021
]
HF685_10250 (rpoN)
Transcription machinery [BR:
phao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HF685_10250 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_IclR
Big_3_2
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
QJB69612
UniProt:
A0A6H2DLR0
LinkDB
All DBs
Position
complement(2086666..2088177)
Genome browser
AA seq
503 aa
AA seq
DB search
MAIGPRLDLRQSQSLVMTPQLQQAIKLLALSNLELETYISDEIEKNPLLETGDLSAENNN
DDGGQAKPEPGEQGSDEILSAGPAESEAPLDMQGDADQFSSNSLSDSDGALDGQLGLNGA
SSPGSGSMGGEAPDFENMLVAEITLADHLMEQAGAILSGTDLFIAQHIIDQIDECGYLQA
DLLELAHRLGVQLHDVERILTEVQSLEPVGVGARDLSECLALQAKEADRYDPAMARLIDN
LDVLAKGALPQLKRICGVDDEDLMDMISELRAYDPKPGCKIGGGDVQAVVPDIFIAERAG
KWIIEVNSATLPKVLVNRTYFTELKDGAQDKASKEWLNECLADASWLIKALDQRQRTIVK
VATEIVKQQEAFFRKGVEHLRPLTLKNVADEIEMHESTVSRVTSNKYLSCSRGTFELKYF
FTSGIQSSTGGEAASAEAVKSHIKSLIDNEDPKKILSDDKLVVLLKAKGFDIARRTVAKY
REALGLGSSVQRRRQKALEGKAA
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggcaataggcccacgcctcgatctacggcagagccagtctttggtgatgacgccgcaa
ttgcagcaggcgatcaagcttctggcactgtccaatctggagctggaaacttatatttcc
gacgagatcgaaaaaaaccctcttctggaaaccggagacctgtcagccgaaaataacaat
gacgatggcgggcaagcaaagccggaaccaggcgagcagggcagtgacgagatactatct
gctggcccggcagagtccgaagcgcctttggacatgcagggcgacgcggaccaattttct
agcaacagcctgtcagatagcgatggcgcactcgatgggcagttgggactaaatggcgcg
agttcgcccggcagtggttctatgggcggtgaagcgccagactttgaaaatatgctggtt
gcggagatcacacttgcagatcatctgatggaacaagcgggcgcgatattgtcgggtacg
gatttatttattgcccagcatattatcgaccagattgatgaatgcggatatctgcaagct
gatctgctggaactggcacatcggctcggcgttcagttgcatgatgttgagcggatattg
accgaggtgcaaagtctcgagcccgtcggcgttggcgcgcgggatctttccgaatgtctt
gcgctgcaggcaaaagaagcggaccgctatgatccggcgatggcgcggcttattgacaat
ctggatgtgctagcaaagggagcactgccgcaactaaagagaatttgcggcgtcgacgat
gaagatctgatggatatgatatcagaacttcgcgcatatgatcccaagccgggatgcaaa
attggcggcggcgatgtgcaggcggtggtgcctgatattttcatcgccgagcgggccggc
aaatggattatcgaagtgaacagcgccacgcttcccaaagtgctggtcaaccgcacctat
tttaccgagctgaaagacggcgcgcaggacaaggcctcgaaagaatggctgaatgaatgt
ctcgccgatgccagctggttgatcaaagcactggatcagcgtcagcggacaatcgtgaaa
gttgctaccgagatcgtgaagcagcaagaagcgttttttcgcaaaggggttgagcatctg
cgaccgttgacgctcaagaatgttgccgatgaaatcgagatgcatgagtcgacggtgagc
cgggtaacctccaataaatatctctcctgttcgcgggggacattcgagcttaaatatttc
tttacgagcggtattcagtcttccaccggcggtgaggcggcatcagccgaggcggttaaa
agccacatcaaatcgctgatcgacaatgaagaccccaagaaaatcctgtccgatgacaag
ctggtcgttttgctcaaggccaagggctttgatatcgctcgccgaacggtagccaaatat
cgcgaagctctcggcctcggcagttcggtgcaacgccgacggcaaaaagcacttgaaggc
aaggctgcctag
DBGET
integrated database retrieval system
