Pedobacter heparinus: Phep_3525
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Entry
Phep_3525 CDS
T00978
Name
(GenBank) MiaB-like tRNA modifying enzyme YliG
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
phe
Pedobacter heparinus
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phe03009
]
Phep_3525
Enzymes [BR:
phe01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
Phep_3525
Ribosome biogenesis [BR:
phe03009
]
Prokaryotic type
ribosomal protein modification factors
Phep_3525
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
ACU05716
UniProt:
C6XTD8
LinkDB
All DBs
Position
4193524..4194858
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AA seq
444 aa
AA seq
DB search
MNTKTPSKIVPVKKPKINVITLGCSKNTYDSEVLMGQLRGNSMDVVHEANKMGKDDIVVI
NTCGFIDNAKQESIDTILQYSQLKEEGKVGKVIVTGCLSERYKPELEAEITNVDAFFGTN
DLNNLLHALGANYKHELIGERLLTTPSHFAYFKIAEGCNRPCSFCAIPLMRGKHVSRDMQ
ELVNEAKILAAGGTKELILIAQDLTYYGLDIYGKRNLDELLRRLSDVNGIEWIRLQYAYP
SGFPMEILDAMNERENICKYLDMPLQHITDNMLKSMRRGITKQKTIDIVNQIRDKVPGIA
MRTTLICGYPGETEQDFEEMMDWVEETRFDRLGCFTYSHEEKTHAHSLVDDVPDEIKQER
VDAIMELQQGISYDINQEKVGKTYKVLVDRKEGAFFIGRTEFDSPEVDNEVLIDASTGYA
ANGSFVKVKIDRAEDFDLYGQIVK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaaacaccgtcaaagatagtacctgttaaaaaacctaaaatcaatgtaatt
acattgggttgttcaaaaaacacctacgattcggaagttttaatgggtcagctgcgcggc
aatagcatggatgtggtgcatgaggccaataaaatgggtaaagacgatatcgtagtgatc
aatacctgcggttttattgacaatgcaaaacaggaatctattgataccatattgcaatac
agtcagcttaaagaagaaggaaaagtgggaaaggttattgtaaccggatgtttatcggag
cgttataaaccagaactggaagctgaaattaccaatgttgatgctttttttggcaccaac
gatttaaataacctgctacacgctttaggtgcaaactataagcatgagctgattggcgaa
cgtttactgactacgccttcccattttgcctattttaaaatagcagaaggctgtaaccgc
ccctgctctttttgcgccatcccgcttatgcggggcaagcacgtttcgcgcgacatgcag
gaactggtaaatgaagctaaaatattggctgcagggggtaccaaagaactgatattaatc
gcacaggacctcacttattatggcctggatatttacggtaaacgtaacctggatgaactg
ctgcgcagattgtctgatgtgaacggtattgagtggatcaggttgcaatacgcgtaccct
tccggtttcccaatggaaatcctggatgccatgaacgaacgcgagaacatctgcaaatac
ctggacatgcctttacagcacattacagacaatatgttgaaatcgatgcgccgtggcatt
accaaacaaaaaaccatagacattgtaaaccagatcagggataaggtaccgggcattgcc
atgcgtaccaccttaatttgcggttacccgggcgaaacggaacaggattttgaggaaatg
atggattgggtggaagaaacccgttttgacagacttggctgtttcacttactcgcatgaa
gaaaaaacccatgcccacagtttggtagatgatgtgcctgatgaaataaaacaggaacgt
gtagacgccattatggaactgcaacagggaatttcgtacgacatcaaccaggaaaaggtt
ggcaaaacctataaggtgctggttgacagaaaagaaggcgccttctttatcggccgtact
gaatttgactcgccggaggtagacaacgaagttttaattgatgccagcacgggctatgcc
gccaatggcagttttgtaaaggtgaagattgaccgggcggaagattttgatctatatgga
cagattgtaaaataa
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