Pseudomonas hydrolytica: NLY38_00440
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Entry
NLY38_00440 CDS
T08519
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
phf
Pseudomonas hydrolytica
Pathway
phf02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
NLY38_00440 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
phf02044
]
NLY38_00440 (tssC)
Secretion system [BR:
phf02044
]
Type VI secretion system
Imp/Vas secretion system core components
NLY38_00440 (tssC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
PBC
Motif
Other DBs
NCBI-ProteinID:
UTH31806
LinkDB
All DBs
Position
84113..85591
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AA seq
492 aa
AA seq
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MSTTSAAVESSHSAAELGILDRIIAETKLTPDDEAYDIAKRGVSAFIEELLKPQNENEPV
KKAMVDRMIAEIDAKLSRQMDEILHHPDFQALESSWRGLKLLVDRTNFRENIKLEILNAS
KQDLLDDFEDSPEIVQSGLYKHIYTAEYGQFGGQPVGALIANYYFDPSAPDVKTLQYVAS
VACMSHAPFIASAGPKFFGLETFTGLPDLKDLKDHFEGPQFTKWQSFREQEDARYVGLTV
PRFLLRNPYDPEDNPVKTFVYKENVANSHEHYLWGNTAYAFASRLTDSFAKFRWCPNIIG
PQSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFIALTMRKGSDNAAFFS
ANSAQKPKFFGISEEGKTAELNYKLGTQLPYMFIVNRLAHYLKVLQREQIGAWKERTDLE
LELNKWIRQYVADQENPSSEVRSRRPLRAAQVIVSDVEGEPGWYRVSLNVRPHFKYMGAD
FTLSLVGKLDKE
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgactagcgcagccgtagaaagcagccacagcgccgccgaactcggcattctc
gaccgcatcatcgccgagaccaaactgacccccgatgacgaggcctacgacatcgccaag
cgcggcgtatcggccttcatcgaagagctgctcaagccgcagaacgaaaacgagccggtg
aagaaggccatggtcgaccgcatgatcgcggagatcgacgccaagctcagccggcagatg
gacgagatcctccaccacccggacttccaggccctggaatcctcctggcgcggcctcaag
ctgctggtggaccgcaccaacttccgcgagaacatcaagctggagatcctcaacgcctcc
aagcaggacctgctcgatgacttcgaagacagcccggaaatcgttcagtccggactgtac
aagcacatctacaccgccgagtacggccagttcggtggccagccggtcggcgccctgatc
gccaactactacttcgacccgagcgctccggacgtcaagaccctgcagtacgtcgcctcg
gtggcctgcatgtcccacgccccgttcatcgcctcggccggcccgaaattcttcggcctg
gaaaccttcaccggcctgccggacctgaaggacctcaaggaccacttcgaaggcccgcaa
ttcaccaagtggcagagcttccgcgagcaggaagacgcccgctacgtcggcctgaccgta
ccgcgcttcctgctgcgcaacccgtacgatccggaagacaacccggtgaagaccttcgtc
tacaaggaaaacgtggccaacagccacgagcactacctgtggggcaacaccgcctacgcc
ttcgccagccgtctgaccgacagcttcgccaagttccgctggtgcccgaacatcatcggc
ccgcagagcggtggcgcggtggaagacctgccgctgcaccacttcgagagcatgggcgag
atcgagaccaagatccccaccgaggtgctggtttccgaccgtcgcgagtacgagctggcc
gaggaaggctttatcgccctgaccatgcgcaagggcagcgacaacgccgcgttcttctcc
gccaactcggcgcagaagccgaagttcttcggcatcagcgaagaaggcaagaccgccgag
ctgaactacaagctgggcacccagctgccgtacatgttcatcgtcaaccgtctggcccac
tacctgaaagtgctgcagcgcgagcagatcggtgcctggaaggagcgtaccgacctcgag
ctggaactgaacaagtggatccgccagtacgtggccgaccaggagaaccccagctccgaa
gtgcgtagccgtcgtccgctgcgcgccgcccaggtcatcgtcagcgatgtcgaaggcgag
ccgggctggtaccgcgtcagcctgaacgtgcgcccgcacttcaagtacatgggtgccgac
ttcaccctgtcgctggtcggcaagctggacaaggagtga
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