KEGG   Pseudomonas hydrolytica: NLY38_09640
Entry
NLY38_09640       CDS       T08519                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
phf  Pseudomonas hydrolytica
Pathway
phf02020  Two-component system
Brite
KEGG Orthology (KO) [BR:phf00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    NLY38_09640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:phf03021]
    NLY38_09640
Transcription machinery [BR:phf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     NLY38_09640
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Sigma70_ECF MerR Rv2175c_wHTH HTH_24 HTH_IclR Sigma70_r3 HTH_31 HTH_29 HTH_AsnC-type HTH_17 HTH_3 TnsD HTH_5 HTH_11 HTH_10 MerR_1 HTH_28 GerE FaeA Fe_dep_repress Phage_terminase HTH_38
Other DBs
NCBI-ProteinID: UTH33539
LinkDB
Position
complement(2100276..2100794)
AA seq 172 aa
MSVQDSSNQQLVGLLYRDHRDWLFGWLRKSLNCTQRAEDLSQDTFVRLLGRPDLHSPREP
RALLTTIARGLLIDQFRRSALERAYLEELALAPEALQPSPEEQALALEQLSEIDRLLGHL
SSKARAAFLYNRLDGLGHAEIAERLGVSPSRVRQYLAQGLRQCYIALYGAPQ
NT seq 519 nt   +upstreamnt  +downstreamnt
gtgtcggttcaggattccagcaatcagcagttggtcggcctgctttaccgcgaccatcgc
gactggctgttcggctggctgcgcaaaagtctgaattgcacgcagcgcgccgaagacctg
agtcaggacaccttcgtgcgcctgctcggccgcccggacctgcacagcccgcgtgaacct
cgtgccttgctcaccaccatcgccaggggcctgctgatcgaccagttccggcgcagtgcg
ctggagcgcgcctatctcgaagaactcgctctggcccccgaggccctgcaaccgagcccc
gaggaacaggcgctggcgctggaacagctgagcgagatcgaccgtctgctcggacacctg
tcgagcaaggcgcgcgccgccttcctctacaaccgcctggacggtctcggccatgccgag
atcgccgagcgtctgggcgtatcgccctcgcgggtgcgccagtacctcgcccagggcctg
cgccagtgctacatcgcgctgtatggagcgccgcaatga

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