Pseudomonas hydrolytica: NLY38_09640
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Entry
NLY38_09640 CDS
T08519
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
phf
Pseudomonas hydrolytica
Pathway
phf02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NLY38_09640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phf03021
]
NLY38_09640
Transcription machinery [BR:
phf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NLY38_09640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
MerR
Rv2175c_wHTH
HTH_24
HTH_IclR
Sigma70_r3
HTH_31
HTH_29
HTH_AsnC-type
HTH_17
HTH_3
TnsD
HTH_5
HTH_11
HTH_10
MerR_1
HTH_28
GerE
FaeA
Fe_dep_repress
Phage_terminase
HTH_38
Motif
Other DBs
NCBI-ProteinID:
UTH33539
LinkDB
All DBs
Position
complement(2100276..2100794)
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AA seq
172 aa
AA seq
DB search
MSVQDSSNQQLVGLLYRDHRDWLFGWLRKSLNCTQRAEDLSQDTFVRLLGRPDLHSPREP
RALLTTIARGLLIDQFRRSALERAYLEELALAPEALQPSPEEQALALEQLSEIDRLLGHL
SSKARAAFLYNRLDGLGHAEIAERLGVSPSRVRQYLAQGLRQCYIALYGAPQ
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggttcaggattccagcaatcagcagttggtcggcctgctttaccgcgaccatcgc
gactggctgttcggctggctgcgcaaaagtctgaattgcacgcagcgcgccgaagacctg
agtcaggacaccttcgtgcgcctgctcggccgcccggacctgcacagcccgcgtgaacct
cgtgccttgctcaccaccatcgccaggggcctgctgatcgaccagttccggcgcagtgcg
ctggagcgcgcctatctcgaagaactcgctctggcccccgaggccctgcaaccgagcccc
gaggaacaggcgctggcgctggaacagctgagcgagatcgaccgtctgctcggacacctg
tcgagcaaggcgcgcgccgccttcctctacaaccgcctggacggtctcggccatgccgag
atcgccgagcgtctgggcgtatcgccctcgcgggtgcgccagtacctcgcccagggcctg
cgccagtgctacatcgcgctgtatggagcgccgcaatga
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