Pseudomonas hydrolytica: NLY38_17180
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Entry
NLY38_17180 CDS
T08519
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phf
Pseudomonas hydrolytica
Pathway
phf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NLY38_17180 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phf03400
]
NLY38_17180 (mfd)
Enzymes [BR:
phf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NLY38_17180 (mfd)
DNA repair and recombination proteins [BR:
phf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NLY38_17180 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UTH30160
LinkDB
All DBs
Position
3676874..3680311
Genome browser
AA seq
1145 aa
AA seq
DB search
MSVLRLPSLPASAGKQQWGNLPGAALSLAIAEAASNAGRFTLVLTEGSQSAERLQEELAF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIATLYRLPQLSRGILVVPIATALHRLAPK
RFLLGSSLVLDVGQKLDVEQMRTRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSEVPY
RIDLFDDEIETLRTFDPENQRSVDKVESIRLLPAREFPLEKKAVSDFRGRFRERFDVDFR
RCPIYQDLSSGITPAGIEYYLPLFFEETGTLFDYLPGDTQVFSLPGIEKAAEHFWTDARN
RYEDRRVDPERPLLPPADIFLPVEDCFARLKNWPRVVVNQDDIEPGVGQTRFEARALPDL
AIQAKAGEPLAALRRFIEEYQGRVLFCAESAGRREVLLELLARLKLKPKEVDGWPAFVES
GERLNICIAPLDEGLLLDDLALIAESPLFGQRVMQRRRREKGRDGGDNVIKNLTELREGA
PVVHIDHGVGRYLGLATMEFDGQAAEFLALQYADEAKLYVPVASLHLIARYSGSDDALAP
LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFQDPALDYATFSAGFPFEE
TPDQQAAIDAVRADMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVLVPTTLL
AQQHYNSFRDRFADWPVKVEVMSRFKSAKEVEGAVQQLAEGKVDIVIGTHKLLQDDVKFH
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPA
RRLSVRTFVMEENKPTIKEALLRELLRGGQVYYLHNDVKTIDKCASELAELVPEARIGVG
HGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRKSMTDDAQKRLEAIAGAQDLGAGFILATHDLEIRGAGELLGD
GQSGQIQAVGFTLYMEMLERAVKAIQKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDVH
ARLILYKRIASATDEDGLKELQVEMIDRFGLLPEPTKHLMRLTLLKLQADKLGITKVDAG
PQGGRIEFAAETCVDPLTLIKLIQAQPKRYKFEGATVFKIQVPMERAEERFNTLEALFER
LAPTT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgtcttccgtctctaccggccagcgccggcaaacagcaatggggcaat
ctgcctggtgccgccctgtccctggccatcgccgaagcggccagcaatgccggacgcttc
actctggtgctcaccgaaggcagccagagcgccgagcgcctgcaggaagagctggcattc
ttcgcgccggacctgcccgtgctgcactttccggactgggaaacgctgccctacgacgtc
ttctcgccgcaccaggacatcatttcccagcgtatcgccacgctctaccgactgccgcag
ctgagccgcggcatcctcgtagtgccgatcgccaccgccctacaccgcctggcgcccaag
cgctttctgctcggcagcagtctggtgctggacgtgggccagaagctcgacgtcgagcag
atgcgtacgcgcctggaggccgccggctaccgctgcgtcgacaccgtgtacgagcacggc
gagttcgccgtgcgcggcgcgctgatcgacctgttccccatgggcagcgaggtgccctac
cgcatcgacctgttcgacgatgaaatcgaaaccctgcgcaccttcgacccggaaaaccag
cgctcggtggacaaggtggagtcgatccgcctgctgccggcgcgcgaattcccgctggag
aagaaggccgtcagcgattttcgcgggcgctttcgcgagcgtttcgacgtggatttccgc
cgctgtccgatctatcaggacctttccagcggcatcaccccggccggtatcgagtactac
ctgccgctgttcttcgaggaaaccggcaccctgttcgactacctgccgggcgacacccag
gtgttctccctgcccggcatcgaaaaggccgccgagcacttctggaccgacgcgcgcaac
cgctacgaggaccgccgcgtcgaccccgagcgcccactgctgccgccggccgatatcttc
ctgccggtggaagactgcttcgcccgcctgaagaactggccgcgcgtggtggtcaatcag
gacgacatcgaacccggtgtcggccagacccgcttcgaggcgcgcgccctgcccgacctg
gcgatccaggccaaggccggcgagccgctggcggcgctgcgccgcttcatcgaggaatat
cagggccgcgtgctgttctgcgccgagtcggccgggcgccgcgaggtgctgctggagctg
cttgcccgtctcaagctcaagcccaaggaagtcgacggctggccggcgttcgtcgaaagc
ggcgaacgcctgaacatctgcatcgcgccgctggacgagggcctgctgctcgatgatctg
gcgctgatcgccgaaagcccgctgttcggccagcgcgtcatgcagcgtcgtcgccgcgag
aagggtcgcgacggtggcgacaacgtgatcaagaacctcaccgaactgcgcgaaggcgcg
ccggtggtgcacatcgatcacggcgtcggtcgctacctgggcctggcgaccatggagttc
gacggccaggccgccgaattccttgccctgcagtacgccgacgaggccaagctctacgta
ccggtggccagcctgcacctgatcgcccgctacagcggcagcgacgatgccctggcgccg
ctgcaccgcctcggctcggaaacctggcagaaagccaagcgcaaggccgccgaacaggtg
cgcgacgtagccgccgaactgctcgacatctacgcccgccgcgccgcccgcgagggtttc
gcctttcaggacccggccctggactacgccaccttcagcgccggcttccccttcgaggaa
accccggatcagcaggccgccatcgacgccgtgcgcgccgacatgctggccggcaagccg
atggatcgcctggtctgcggcgacgtcggcttcggcaagaccgaggtggccatgcgcgcc
gccttcatcgccgtgcacagcggcaagcaggtagccgtgctggtgcccaccaccctgctc
gcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtgaaggtcgag
gtgatgagccgcttcaagagcgccaaggaagtcgaaggcgctgtgcagcaattggccgaa
ggcaaggtggacatcgtcatcggcacccacaagctgctgcaggacgacgtcaagtttcac
aatctgggcctggtgatcatcgacgaggagcaccgtttcggcgtgcgccagaaggagcag
ctcaaggccctgcgcagcgaggtcgacatcctcaccctcaccgccacgccgattccgcgc
acgctgaacatggccgtggccggcatgcgcgacctgtcgatcatcgccacgccgccggcg
cggcgcctgtcggtacgtaccttcgtcatggaggagaacaagccgaccatcaaggaagcg
ctgctgcgtgagctgctgcgcggcggccaggtgtactacctgcacaacgatgtgaagacc
atcgacaaatgtgccagtgagctggccgaactggtgcccgaggcgcgcatcggcgtcggc
cacggtcagatgcgcgagcgcgagctggaacaggtgatgagcgacttctaccacaagcgc
ttcaacgtgctggtggcctcgaccatcatcgaaaccggcatcgacgtgcctagcgccaac
accatcatcatcgagcgtgccgacaagttcggcctggcccagctgcaccagctgcgcggc
cgtgtcggccgcagccaccaccaggcctacgcctacctgctcacgccgccgcgcaagagc
atgaccgacgatgcgcagaagcgcctggaggccatcgccggcgcgcaggacctgggcgcc
ggctttatcctcgccacccatgacctggaaatccgcggcgccggcgagctgctcggcgat
ggtcagagcgggcagatccaggccgtcggcttcaccctctacatggaaatgctggaaagg
gccgtgaaggccatccagaaaggcgagcagcccaacctcgatcagccgctgggcggcggc
ccggagatcaacctgcgcgtaccggcgctgatccccgaggactacctgcctgacgtgcat
gcgcgcctgatcctctacaagcgcatcgcctcggccaccgacgaggacggcctgaaagag
ctgcaggtggagatgatcgaccgcttcggcctgctgccggagccgaccaagcacctgatg
cgcctgaccctgctcaagctgcaggccgacaagctgggcatcaccaaggtcgacgccggc
ccgcagggcggccgtatcgagttcgccgcggaaacctgcgtcgacccgctgaccctgatc
aagctgatccaggcccaaccgaaacgctacaagttcgaaggcgccaccgtcttcaagatc
caggtgccgatggagcgcgcggaagaacgcttcaacaccctggaagccctgttcgagcgc
ctcgcgcccaccacctga
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