Pseudopodoces humilis (Tibetan ground-tit): 102104157 Help Entry 102104157         CDS       T02921                                  Gene name PTCH1 Definition (RefSeq) patched 1   KO K06225   patched 1 Organism phi  Pseudopodoces humilis (Tibetan ground-tit) Pathway phi04340   Hedgehog signaling pathway Brite KEGG Orthology (KO) [BR:phi00001]  09130 Environmental Information Processing   09132 Signal transduction    04340 Hedgehog signaling pathway     102104157 (PTCH1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Patched Sterol-sensing Motif Other DBs NCBI-GeneID:  102104157 NCBI-ProteinID:  XP_005522797 LinkDB All DBs Position Un AA seq 1442 aa AA seqDB search MASAGNASEPETSSSAGGGGHPGRAARIGGGRRRRTGGNRSAAAPDREYLQRPSYCDAAF ALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLRAAN LETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPQEDGANVLTTEALRQHLE SALQASRVHVYMYNRQWKLEHLCYKSGELITEAGYMDQIIEYLYPCLIITPLDCFWEGAK LQSGTAYLLGKPPLQWINFDPLEFLEELKKINYQVESWEEMLNKAEVGHGYMDRPCLNPA DPDCPITAPNKNSTKPLDVALVLSGGCYGLSRKYMHWQEELIIGGTVKNSSGKLVSAQAL QTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRMYVEVVHQSVAQNSTQKVL SFTTTTLDDILKSFSDVSAIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVALS VAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGEC LKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDL YRREDRRLDIFCCFTSPCVTRVIQVEPQAYVENDNTCYSPPPPYSSHSFAHETQITMQST VQLRTEYDPHTQVYYTTAEPRSEISVQPVTVTQDNLSCQSPESTSSTRDLLSQFSDSSIH CLEQPCTKWTLSSFAEKHYAPFLLKPKAKIVVIFLFLGLLGLSLYGTTRVRDGLDLTDIV PRETREYDFIAAQFKYFSFYNMYIVTQKADYPNVQHLLYELHRSFSNVAYVLLEEDRQLP KMWLHYFRDWLQGLQDAFDSDWETGKITYNNYKNGSDDAVLAYKLLVQTGNHAKPIDISQ LTKQRLVDADGIINPNAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRL RIPAAEPIEYAQFPFYLNGLRETSDFVEAIEKVRAICNNYTSLGISSYPNGYPFLFWEQY IGLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIVVVLALMTVELFGMMGLIGIKLSAV PVVILIASVGIGVEFTVHVALAFLTAIGDRNHRAVLALEHMFAPVLDGAVSTLLGVLMLA GSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGQDRLPTPSPEPA PGTVRFALPPGHTNNASDSSDSEYSSQTTVSGISEELHQYEATRGPGAPVHQVIVEATEN PLFARSTVVQPEARHQPGPRLQSNPEPSTQQPWHQGRQPKREAREGPRPPPHRPRRDAFE ISTEGHSGPSSRDRLGHKARSHSMRSPAFGAAGAAGAAYCPPITTVTASASVTVAVHPAL HSHSSRAASFPSFEGHHEAGHAPFEDPHVPFNVRCERRNSKVEVIELQDVECEERIPGNS SQ NT seq 4329 nt NT seq  +upstreamnt  +downstreamnt atggcctcggccggtaacgcgtcggagccggagaccagcagcagcgcgggcggcggaggc caccccggccgggcggcgagaatcggcggcgggaggcggcgaaggactggagggaatcgg agcgccgcggcgcccgaccgggagtatctgcagcggccaagctactgcgatgcggctttc gccttggagcagatttcaaaggggaaggcgacgggacggaaagcgccgctgtggctgcga gcaaagtttcagagactgttgtttaaactgggctgttacattcagaaaaactgcgggaag tttttggttgtcggcctcctgatatttggggctttcgctgtaggattaagggcagctaat ctcgagaccaacgtggaggagctgtgggtggaagttggtggacgagtgagtcgggagtta aattacacacggcagaagattggagaagaagccatgttcaacccccagctcatgatccag actccacaggaagatggtgctaatgtactaacaacagaagcactacgacagcaccttgag tctgcacttcaggccagcagagtacatgtctatatgtacaacagacagtggaaattggaa catttatgttacaaatcaggagaactcatcacagaagcaggttacatggaccagattata gaatatctttatccttgcttaattatcactcctttggactgcttctgggagggagcaaag ctacaatcaggaactgcctatctattagggaagcctcctttgcagtggatcaactttgac cccttagaattcttggaagagttaaagaaaataaactaccaagtggagagctgggaagaa atgctgaataaagcagaggttggtcatggttatatggatcgaccctgcctgaatcctgct gatcctgattgcccaatcacagctcccaataaaaattccaccaaacctcttgatgtagcc cttgttttgagtggtggatgctatggactatcaaggaaatacatgcattggcaggaggag ctgattataggtggtacagtcaagaacagttctggtaaacttgtcagtgcccaggctttg caaaccatgtttcagttaatgacccctaagcaaatgtatgagcatttcaaggggtatgaa tatgtttcacatatcaactggaacgaggacaaggcagcagcaattctggaagcctggcag aggatgtatgttgaggttgttcatcaaagtgttgcacaaaactctactcagaaggtgctt tcctttacaacgaccaccctagatgacatcttgaagtcattttctgatgtcagtgctatc cgagtagctagtggctacttactaatgcttgcctatgcctgcttaacgatgctgcggtgg gactgtgccaagtctcagggtgctgtggggctggcaggagtcttgttggttgcactctct gtggctgcaggattgggcctgtgctcattgattggcatttcctttaatgctgccacaact caggttttgccttttcttgctcttggagttggtgtagatgatgttttccttctggcacat gcatttagtgaaacaggacagaataagagaattccgtttgaggacagaacaggtgaatgt ctgaagcgaacaggagcaagtgtagcccttacatctatcagcaatgttactgctttcttt atggctgccttaattcctattccagctttaagagcattttctctccaagcagcagttgtg gtggtgttcaattttgctatggttctgctgattttccctgctatcctgagcatggacctt tatcgtcgagaagacaggagactggacatattttgctgttttacaagcccgtgtgtcacc agagtgattcaggttgagcctcaagcgtacgtggaaaatgacaatacttgctacagtcct ccacccccgtacagcagccacagttttgcacatgaaactcagattacaatgcagtccaca gtgcagttgcgcacagaatatgatcctcacacgcaggtgtactacaccacagcagagcct cgctcagaaatatctgtgcagccagtgacagtgacacaagataatctgagctgccagagc ccagaaagcacaagctcgacgagggatttactttcccagttttcagactccagtatacat tgcctcgagcaaccctgtacgaagtggacactctcatcttttgcagaaaagcattatgct ccattcctcctgaaaccaaaagctaagattgtggttatttttctttttttgggtttactt gggctcagcctttatggaactacccgggtgagagatggactagatctcacagacattgta ccacgggaaacacgggaatatgactttattgctgcacagttcaagtacttttcattctac aacatgtacattgtgacacagaaagcagactatccaaatgtccagcacttactttatgaa cttcacagaagtttcagcaacgtggcatatgtcttgttggaagaggataggcagctcccc aagatgtggttgcactactttcgagactggctgcaaggacttcaggatgcctttgacagt gactgggaaactgggaagatcacttacaacaactataaaaatggttctgacgatgctgtt ctggcttacaaactcttggtacaaacaggcaaccatgcaaagcccattgacatcagccag ttgactaaacagcgtctggtggatgcagatggaatcattaacccaaatgctttctacatc tacctgacagcctgggttagcaacgaccctgtggcctatgctgcctcacaagccaacatt cgcccgcaccgcccggagtgggtccacgacaaagcagactacatgccagaaacgcggctg aggattccagcagccgagcccatagaatatgctcagtttcctttctacctcaatggattg cgtgaaacttctgactttgtggaggctatcgagaaagtgagagctatctgtaataactac accagcctggggatctccagctacccaaatggttacccatttctgttctgggagcagtac attggacttcgtcactggctcctcttatccattagtgtggttttagcttgcacgtttctg gtgtgtgccctcttcctcctaaacccctggacagctgggatcattgtggtggtgctggct ctgatgactgtggagctgtttggcatgatgggtctgattggaataaagctgagtgcagtg cctgtggttatcctgattgcttctgttggcattggtgtggaattcactgttcacgttgct ttggcgtttttaactgccataggagacaggaaccatagggctgtgcttgcattggaacac atgtttgcaccagtgctggatggggccgtgtccactctgcttggggtgttaatgcttgca ggatcagagtttgattttattgtcaggtatttctttgctgttttggcaatcctaaccatt ctgggagttctcaatggattggtgctgcttcctgttcttctctcattctttggaccatac cctgaggtatctccagccaacggacaggacagattgcccacaccatctcctgagccagcc cccggtacagtgaggtttgcactgccacctggccacacaaataatgcttcggattcctct gattctgagtacagctctcaaaccacagtgtctggcatcagtgaagagctgcatcagtac gaggccacacgaggccctggggcaccagtccaccaagtaatagtggaagcgactgagaat cctctctttgcaagatccactgtggttcagccggaagcaaggcatcagccgggtcctagg ctgcagtcgaatccagagcccagcacgcagcagccgtggcatcagggcagacagcccaaa cgggaagcgagggaagggccgcgaccacctcctcaccgccctcgcagggacgcttttgaa atttctaccgaagggcactcgggacccagcagcagggatcgcttgggccacaaggctcgt tcccacagcatgagaagcccggcattcggggcggcgggcgctgcgggagctgcctactgc ccgcctatcactactgtgactgcctcggcctcggtcactgttgctgtccaccctgccctg cacagccacagctcccgggcagcgagcttcccgtccttcgagggacaccatgaagctggc cacgcgccatttgaggacccccatgtgccttttaatgtgaggtgtgaaagaagaaattct aaagtagaagtaatagaactgcaagatgttgaatgtgaggaaaggatacctggcaacagc tcacaataa

Pseudopodoces humilis (Tibetan ground-tit): 102108629 Help Entry 102108629         CDS       T02921                                  Gene name PTCH2 Definition (RefSeq) patched 2   KO K11101   patched 2 Organism phi  Pseudopodoces humilis (Tibetan ground-tit) Pathway phi04340   Hedgehog signaling pathway Brite KEGG Orthology (KO) [BR:phi00001]  09130 Environmental Information Processing   09132 Signal transduction    04340 Hedgehog signaling pathway     102108629 (PTCH2) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Patched Sterol-sensing MMPL Motif Other DBs NCBI-GeneID:  102108629 NCBI-ProteinID:  XP_005521152 LinkDB All DBs Position Un AA seq 1348 aa AA seqDB search MPAEPPRAAPPPLRAARRKPLPEVSEGRATPLWLRARFQALLFALGCRIQRHCGKVLFVG LLVFGALAVGLRVASIETDIEHLWVEAGSRVSQELRYTKEKLGEESVYTSQMLIQTPKKD GDNILTQEALQLHLEAALAASKVQVSLYGKSWDLNKICYKSGVPIIENGMIERMIEKLFP CVILTPLDCFWEGSKLQGGSAYLPGRPDIQWSNLDPLQLMEELGQFTSLEGFKELLDKAE VGQAYMERPCLDPRDPQCPPSAPNKQSQQSPDIPAELSGGCHGFSRKFMRWQQELILGGT TKDSQGKLLRAEALQTMFLLMSPRQLYEHFKDDYEIHDISWSEEKAGAILEAWQRKFVEL AQDSIPPNATQSVHAFSTTTLNDIMKSFSDVSVIRVAGGYLLMLAYACVTMLRWDCSKSQ GAVGLAGVLLVALSVASGLGLCSLLGISFNAATTQVLPFLALGIGVDDMFLLAHAFTETS QHIPFKERTGECLKRTGTSVALTSVSNMIAFFMAALVPIPALRAFSLQAAVVVVFNFAMV LFVFPAILSLDLHRREKRRLDILCCFYSPCSSRVIQIQPQELADANDNHACHPSPYGHPG VATSTQITTTVQAFTRCDPSGHHIVTVLPPTSQVCTSPAVLLPHTDPLGSQVFAPSSSTR DLLSQLDEAKSGRECVPLPFCRWSLADFAREKYAPLLLRTRTKVVVVVLFLALLGLSLYG TTMVHDGLYLTDIVPRDTKAHAFISAQFKYFSFYNMFIVTKGGFHYPGAQAALLSLHQAF STVKYVVREGNRDLPKMWLHYFQDWLRGLQATFDRDWQAGRITHDSYRNGSEDGALAYKL LIQTGNKKEPFNFNQLTTRRLVDENGIIPPDTFYICLTVWASNDPLGFAASQANFYPPPP EWIHDKYDTTGENLRIPAAQPLEFAQFPFYLSGLRRTSDFVEAIESVRAICREAAQRHGV LSYPSGYPFLFWEQYIGLRHWFLLAISILLACTFLVCALLLLNPWTAGIIVSILAMMAVE LFGIMGLMGIKLSAIPVVILIASVGIGVEFTVHVALGFLTAAGSRNVRSAAALEHTFAPV MDGAVSTLLGVLMLAGSEFDFIMRYFFAVLTILTLLGLLNGLVLLPVLLSVIGPPPEASQ VDNGPCLPPPESAPPCLGPGGMYVRHTPAWPATFPEPSDTEHYTESIGPGSPRGPFIVPP APAHILLEAGKDPSFPRITVLKPYKDSLEVQGKKEASGPQHAAPLPFGEPCTMLPREHLQ SGPPGTRPAPPAALPTYSTHLQGPAGSYTTVTATASVTVALHPTLPGSYPNFTSSERDCL DEPSTSGTTVPNTFEMQNMGHHGTGARR NT seq 4047 nt NT seq  +upstreamnt  +downstreamnt atgccggccgagcccccccgcgccgcgccgccgccgctccgcgccgcccgccgcaagccg ttgcccgaggtgagtgaggggcgagcgaccccgctgtggctgcgggcccgctttcaggcg ctgctcttcgccctgggttgccggatccagcggcactgcgggaaggtgctcttcgtgggg ctgctggtgttcggggcgctggccgtgggactacgggtggcctccatcgagaccgacatc gagcacctctgggtggaagcgggcagccgggtgagccaggagctgcgctacaccaaggag aagctgggcgaggagtcggtctacacctcccagatgttgatccagaccccgaagaaggat ggtgataacattctgacgcaggaggccctgcagctccacctcgaggcggccttggccgcc agcaaggttcaagtctcactgtacggaaaatcgtgggatttgaacaagatctgctacaag tcgggtgtccccatcatcgagaacggcatgatcgagaggatgatagagaagctgttcccc tgtgtgatcctgacaccactggactgtttctgggaaggctccaagctgcagggaggatca gcctatctcccgggccgcccagacatccagtggagcaacctggaccctctgcagctgatg gaggagctggggcaattcacatccctggaaggcttcaaagagctgctagacaaggcagag gtgggacaggcttacatggagcggccctgcctggacccccgggacccccaatgtcccccc agcgcccccaacaagcagagccagcagagccccgacatcccggccgaactctcggggggc tgccacggcttctccaggaagttcatgcgctggcagcaggagctgattttgggcggcaca accaaagactcccagggcaagctgctacgcgccgaggccctgcagaccatgttcctcctc atgagtccccggcagctctatgagcacttcaaggatgactatgagatccatgatatcagc tggagcgaggaaaaggcaggagccatcctggaggcctggcagaggaaattcgtggagctg gcacaggactccatccctcccaacgccacacagagtgtccatgctttctctaccaccacg ctcaacgacatcatgaagtccttctctgacgtcagtgtcatccgggtggctgggggctac ctcctcatgctggcctatgcctgtgtcaccatgctgcggtgggactgctccaagtcccaa ggggctgtgggcctggcaggggtcctgcttgtggctctctccgtcgcctctggtctgggg ctctgctcactgctgggcatctccttcaatgcagccaccacccaggtcctgcccttcctg gccctcggcattggggtggatgacatgttcctgttggctcacgccttcaccgagacgagc cagcacatccccttcaaggagcggacgggtgagtgtctgaagcggacagggaccagtgtg gctctcacctctgtcagcaacatgatcgcctttttcatggcagccctggtgcccatccct gccctgcgcgccttctccctccaggctgcagtggtggttgtgttcaacttcgccatggtg ctctttgttttccctgctatcctgagcctggacctgcaccgccgggagaagcgccggctc gacatcctctgctgcttctacagcccttgctcctcacgggtcatccagatccagccccaa gagcttgccgatgccaacgacaaccatgcctgtcacccgtctccttatgggcaccccggt gtggccaccagcacccagatcaccaccactgtgcaagccttcacccggtgtgacccctcg ggccaccacattgtcaccgtcctaccacccacctcccaagtgtgcacctcacctgccgtc ctcctgccccacaccgaccccttgggctcgcaggtcttcgccccatccagctccacccgg gatctgctgtcccagctggatgaggccaagagcgggcgggagtgtgtccccctgcccttc tgccgctggagcctcgctgattttgcccgggagaagtacgccccactccttctgcgcacc cggaccaaggtggtagtggtggtgctgttcctggcactgctggggctgagcctctacggc accaccatggtacatgatggcctctacctgactgacatcgtgccacgggacaccaaggca cacgccttcatctcagcccagttcaagtacttctccttctacaacatgtttatcgtcact aagggtggcttccactacccgggtgcccaggctgccctgctgagcctgcaccaggccttc agcaccgtcaagtacgtggtgcgggagggcaaccgcgacctgcctaaaatgtggcttcat tacttccaggactggctgcgagggctccaggccacctttgacagggactggcaggctggg cgcatcacccatgacagctaccgcaatggctccgaggatggggcactggcatacaagctc ctcatccagactggcaacaagaaggagcccttcaacttcaatcagctgaccacacggcga ctggtggacgagaatggcatcatcccccccgacaccttctacatctgcctgactgtgtgg gccagcaacgaccccctgggctttgctgcctcccaggccaacttctaccccccaccccct gagtggattcatgacaagtacgacaccacgggcgagaacctgcgaatcccagcagcccag ccgctggagttcgcccagttccctttctacctgagcgggctgcgtcgcacatctgacttt gtggaggcgattgagagcgtacgggccatctgccgggaggctgcccagcgccacggtgtg ctgagctaccccagtggctaccccttcctcttctgggagcagtacatcggcctgcggcac tggttcctgctggccatcagcatcctgctggcctgcaccttcctcgtctgtgccttgctg ctgctcaacccctggaccgccggcatcatcgtctccatcctggccatgatggctgtggaa ttgtttggcatcatgggactgatgggcatcaagctgagcgccatccctgtggttatcctc attgcctcggtgggcatcggtgtggagtttactgtccacgtggccctgggcttcctgaca gctgcagggagcaggaatgtgcgctcagccgcagcactggagcacacttttgcccctgtg atggatggtgctgtttccaccctcctcggtgtcctcatgctggctggctctgagtttgat ttcatcatgaggtatttctttgcggtgctgaccatcctgacgctgctggggctgctcaac gggctggtgctgctgcctgtcctgctctctgtcatcgggccaccccctgaggcatcccag gtggataatggcccatgcctacccccaccagagtcagcacccccgtgtctgggccctggg ggaatgtatgtccggcacactccagcctggcctgccaccttccctgagccctctgacacg gagcactacacagagagcatagggccaggcagcccacggggacccttcattgtgccccct gccccggcacacatcctactggaggctggcaaggaccccagcttcccccgcatcactgtc ctgaagccctacaaggacagcctggaggttcagggaaagaaagaggcttctggccctcag catgccgcccccctgcccttcggggagccgtgcaccatgctgccccgagagcacctgcag tccggcccaccgggcacccggccagccccccctgcagccctgcccacctacagcacccac ctgcagggtcccgccggcagctacaccaccgtcacggccactgcctcagtgactgtggcc ctgcaccccacactgcctggctcctaccccaacttcaccagcagcgagcgggactgcctg gatgagccgagcaccagcggcaccactgtgcccaacacctttgagatgcagaacatggga caccacgggacaggtgcccggcgctag

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