KEGG   Pelagibacterium halotolerans: KKY_1733Help
Entry
KKY_1733          CDS       T01645                                 

Definition
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
phl  Pelagibacterium halotolerans
Pathway
phl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:phl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    KKY_1733
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:phl03400]
    KKY_1733
Enzymes [BR:phl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KKY_1733
DNA repair and recombination proteins [BR:phl03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     KKY_1733
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 DNA_ligase_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AEQ51748
UniProt: G4RCU3
LinkDB All DBs
Position
complement(1724140..1726602)
Genome map
AA seq 820 aa AA seqDB search
MARARDLLKEYRAKRDFTKTSEPQGGKGASSGNVFVVQKHDATRLHYDFRLEYEGVLKSW
AVTRGPSTDPADKRLAVRTEDHPLDYATFEGKIPQGEYGGGTVMLWDFGTWEPVEDANKG
FKSGKLKIRLKGDRMKGDWALIRMKPKSGEKRENWLLIKEHDDFATEGGSKLLDKSTSVS
TGRKMSAIEKGEPPVRKSKTGGRSLPKFVEPQLATLVDSVPGGNDWLFEMKYDGYRCIAV
ISGEDVRLYTRNGLDWTDTFASLVAPMSLLTESSMLLDGEICAFDENGKTSFSTLKSHLS
EGGPLVYFAFDLLEIDGKSLRAKPLSERKAALENVLGRRTRHDPVQFSPDISGKGTEVFS
AICKAGHEGIIAKHGAAPYRSGRGKSWLKVKCTLRQEFVIVGWSPSEKRRGVFASLLLAT
QQDGKLVYRGRVGTGFPDDLRADLQAMLDKDARKTAPLTGVPRQMARGARWVSPRHLAEI
AYTELTPDGILRHPSFLGLREDKPAKGIGLEQPGKAEGGHTLSLTEDTGIAAAEKAGIKL
SSPDKVLYPGQGVTKGKLAAYYASVAEAMMPYIANRPLSLVRCPAGRAKQCFFQKHDTGG
FAQGMDTVQITEKDGKSDSYFTLDGLEGLLAGVQMGVLEFHIWGSRRDAIEKPDRIVFDI
DPDEGLVFGDVKSAALDIRGRLADLGLETFAMVTGGKGIHVIAPIARRAEWPAVKAFAAG
FAKQMAEDEPERFTATLSKKARKGKLFIDYLRNERGSTAIAPYSTRAREGAPVAVPVDWN
EVERLNAANRFSLEAAVERARDNAWPGYGKLRQSLPKSTK
NT seq 2463 nt NT seq  +upstreamnt  +downstreamnt
atggcccgggcccgcgatctcctcaaagaataccgcgccaagcgggattttacgaaaaca
agcgagccccaaggcggtaagggcgcatcctcgggcaatgtctttgttgtgcaaaagcac
gacgcgacgcggcttcattacgacttcaggcttgaatatgaaggagtgctcaagagttgg
gcggtaacgcgggggcccagcactgatcctgccgacaagcggcttgcagtgcgtacagaa
gatcacccgctcgattacgccaccttcgagggcaaaattccccagggcgaatatgggggc
ggcaccgtcatgctgtgggatttcgggacttgggagccggtcgaggacgcaaataagggc
ttcaagtccggcaaactcaaaatccgcctcaagggcgaccggatgaagggtgactgggcc
ctcatccgcatgaagccgaaatcgggtgaaaagcgcgagaactggctgctgatcaaggag
cacgatgatttcgccaccgagggcggctcaaaactactcgacaagagcaccagcgtgtcg
acgggccgcaagatgagcgccatcgaaaaaggagagccaccggtaagaaaatcgaagacg
ggtgggcgatccttgccgaaattcgtcgaaccccagcttgcaacgctggtcgacagcgta
ccggggggcaatgattggctgttcgagatgaaatatgacggctatcgctgcatagccgtc
atttcgggcgaagatgtccggctctatacgcgcaatggcctggactggaccgacacgttc
gcctcattggttgcacccatgtccctgctcacagaatctagcatgcttctggatggagaa
atctgcgcgttcgatgagaacggcaagaccagtttttcaaccttgaagtcgcatctttcc
gaaggcgggccgctggtctatttcgcgttcgatctgctcgaaatcgatggtaagtccttg
cgcgcgaagccgctttccgagcgcaaggcagcgcttgaaaacgtgttggggcgccgtacg
cgccacgaccccgtccaattttctcccgatatttcaggcaaggggaccgaggtgttttcg
gccatctgcaaggcggggcacgaaggcatcatcgcaaaacatggcgcagcgccatatcgg
tccggacgcggcaaatcctggctcaaggtcaaatgcacgttgcggcaggaatttgtcatt
gtcggctggtcgccctcggaaaagcgtcgcggcgtgttcgcttcgctgctccttgccaca
cagcaagatggcaagctggtttatcgcggccgcgtgggtacggggttccccgatgacttg
cgggccgatctccaggccatgctggacaaagacgcccgcaagaccgcgccactgaccggc
gtgccgcgccagatggcgcgcggcgctcgctgggtttcgcctcgtcatttggccgagatc
gcctacaccgaactgaccccggacggaattctgcgccacccgtctttccttggattgcgg
gaagacaaaccagccaaaggcatcggcctggaacagccaggcaaggccgaaggaggccac
accctgtcgcttactgaagacaccggaatcgccgccgccgaaaaggccggcatcaagctc
tccagccccgacaaggttctttatcccgggcagggggtaaccaagggcaagctggctgcc
tattatgcatcggtggccgaggcgatgatgccctacattgccaatcggcccctgagcctc
gtccgttgccccgccggccgcgcaaagcagtgcttttttcaaaagcacgacaccggcggg
ttcgcgcagggcatggataccgtgcagataaccgaaaaggacggcaagtccgacagctat
ttcaccctcgatggtctcgaaggcctgctcgcgggcgtgcagatgggagtgctggagttc
catatatggggctctcgccgcgacgccatcgaaaagccggacaggatcgtattcgacatc
gatcccgacgagggccttgttttcggcgatgtcaaatccgccgctctcgacattcgcggc
cggttggccgatctgggccttgaaacctttgcaatggtgactggtggcaagggcatccat
gtaatcgcgcctatcgcgcgccgcgccgagtggcccgccgtcaaggcgtttgctgccgga
tttgcaaagcagatggccgaggacgagccggagcggttcactgcaacgctttccaaaaag
gcccgcaagggcaaactgttcatcgattatctgaggaacgaacggggctcgacggccatc
gcgccttactccacccgggctagagaaggcgcgcccgtcgccgtccccgtcgactggaac
gaggttgaacggttgaacgccgccaatcgtttctcgctggaggccgcggttgagcgcgcg
cgggacaatgcctggccaggctatggcaagcttcgccaatcgttgcccaagtccacaaaa
tag

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