Phreatobacter cathodiphilus: C6569_07990
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Entry
C6569_07990 CDS
T05356
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
phr
Phreatobacter cathodiphilus
Brite
KEGG Orthology (KO) [BR:
phr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phr03016
]
C6569_07990 (rnd)
Enzymes [BR:
phr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
C6569_07990 (rnd)
Transfer RNA biogenesis [BR:
phr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
C6569_07990 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AVO45009
UniProt:
A0A2S0NA03
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All DBs
Position
1639205..1640377
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AA seq
390 aa
AA seq
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MLITSSSELAAVCARLAKHPFVTVDTEFLRETTFWPKLCVIQLASTAEAVAVDALAPGMD
LTPFFDLMVDPAVVKVFHAARQDVEIVWHLSKRIPEPLFDSQVAAMVLGYGDSISYDQLV
QRTNGTQLDKTSRFTDWSKRPLSPAQIDYAIADVTHLRDVYVKLTGELQKRGRSDWVAEE
MRVLTSPDTYRQEPERAWERFRSRVRKPRELAVLMEVAAWREREAQARDVPRSRVLKDDS
LFDIALTGPKSVEALGAMRSIPKGWERSRDGMAVVEAVQAGLARDPRELPPIDKHRPQSQ
SQSATVELLKVLLKMVAEKHHVAAKVVATSDDLDRIAESDEADVGALKGWRRELFGDKAL
ALKHGKLALAIERGRVTTVERTPAVVIAEA
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcacgtcctcttcagaactcgccgccgtttgcgcgcggctcgccaagcacccc
ttcgtcacggtcgacacggagttcctccgtgagacgaccttctggccgaagctctgcgtc
atccagctcgccagcacggccgaggcggtcgccgtcgacgcgctcgcgcccggcatggac
ctcacgcccttcttcgatctgatggtcgaccccgccgtcgtgaaggtgttccacgcggca
cggcaggacgtggagatcgtctggcatctgtccaaacgcattcccgaaccgctgttcgac
agccaggtcgccgccatggtgctcggctacggcgactcgatctcctacgaccagctcgtc
cagcgcaccaacggcacgcagctcgacaagaccagccgcttcaccgactggtcgaagcgg
ccgctgagcccggcccagatcgactatgccatcgccgacgtcacccacctgcgcgacgtc
tacgtgaagctcaccggcgaactgcagaagcgcggccgcagcgactgggtcgccgaggag
atgcgcgtcctcacctcgcccgacacctaccggcaggagccggagcgcgcctgggagcgg
ttccgcagccgcgtgcgcaagccgcgcgagctcgccgtgctgatggaggtcgccgcctgg
cgcgagcgcgaggcgcaggcccgcgacgtgccgcgttcgcgtgtcctgaaggacgacagt
ctcttcgacatcgccctcaccggcccgaagagcgtcgaggccctgggcgccatgcggtcc
atccccaagggctgggagcgctcgcgcgacggcatggccgtggtcgaggcggtgcaggcg
ggcctcgcccgcgatccccgcgaactgccgcccatcgacaagcaccgcccgcagagccag
tcgcagtcggcgaccgtcgagctcctcaaggtcctcctcaagatggtcgcggagaagcat
cacgtggccgccaaggtggtggcgacctccgacgacctcgaccgcatcgcggagagcgac
gaggccgatgtcggcgccctcaagggctggcggcgcgaactcttcggcgacaaggccctc
gccctgaaacacggcaagctggccctcgccatcgagcgcggccgggtcaccacggtcgaa
cgcacaccggcggtcgtcatcgccgaagcctga
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