Pangasianodon hypophthalmus (striped catfish): 113533378
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Entry
113533378 CDS
T05759
Name
(RefSeq) PDZ and LIM domain protein 2-like isoform X1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113533378
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
phyp04990
]
113533378
Domain-containing proteins not elsewhere classified [BR:
phyp04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
113533378
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
DUF4749
PDZ_6
LIM
PDZ_2
FtsA
Motif
Other DBs
NCBI-GeneID:
113533378
NCBI-ProteinID:
XP_026781299
LinkDB
All DBs
Position
Unknown
AA seq
385 aa
AA seq
DB search
MTSESAWGSVRWCTASCGLIMAFTVNLTGPSPWGFRISGGRDFKKAITVSKVNPGSKAEK
ASLQPGDVIMEINGENTGDMLNVEAQNKIKSSKTQLQLLVERPAPSSPGQTNGISSTEQL
VGRFQETLHVRDENQNYREYSISSPTSFSPGPYSPEPPSSPERKGGRITPTMKSPVFPSW
TPEEKVTSHRLSRPLSQEFSTVDFRSNSVSSRTPTPPERYSPHSPIEREIPMSPRRNSSD
FAMQRFDRESEVYKMIQENKESRAAPRQSSTFKMLQEVLEADEKEAALRFPGKLSPNPPK
PISSVAGVQKYHTCEKCGNNIVTQAVRIMDERFRHPECYTCTDCGLNLKMRGHFWVGDEL
FCEKHARQRYQGPGAGYRHPISPHH
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcggagtcagcatggggctccgtaaggtggtgcacagcgtcctgcggtctcatc
atggctttcacagtgaacctgactggcccatctccctggggcttcagaatatctggtggg
agggactttaagaaggccattacagtctccaaggtgaaccccggcagtaaagctgagaag
gcctctcttcaacctggtgacgtaatcatggaaataaacggagaaaatactggtgacatg
ctgaacgtagaggcgcaaaacaaaatcaagagctccaaaacacaactgcagctgctagtc
gagaggccagccccttcgagtcctggtcaaaccaacgggatcagttccacagagcaactg
gtgggccgtttccaggaaaccctgcatgtgagggatgagaaccagaactacagagagtac
tccatctccagcccaacatctttctctccaggcccatactccccagagccaccctccagc
cctgagcgcaaggggggcaggatcacacccaccatgaagagcccagtgttcccttcctgg
actcctgaagagaaagtcaccagtcacagactgtccaggccactttctcaggagttttcc
acggtggacttccgcagcaactctgtgtccagtcgaactccgacgcctcctgaacgctac
tcgccacatagtccaatcgaacgagagatacccatgtccccccgccgcaacagctcggac
tttgcgatgcagcggttcgatcgtgaatcagaggtctacaagatgattcaggagaacaag
gagtcacgtgcagctcctcgccagtccagcaccttcaaaatgctgcaagaggtgttggag
gctgatgagaaagaggctgctctcaggtttccagggaagctgtcaccaaacccaccgaag
ccgatttcgtctgtcgctggggtccagaaataccacacctgtgaaaaatgtggcaacaac
attgtcacccaggcggtgaggatcatggacgagcgtttccgtcaccctgagtgctacacg
tgcacagactgcggcctcaacctgaagatgcgaggccacttctgggtgggagatgagctg
ttctgcgagaagcatgcacgccaacgctatcaggggcctggtgcgggctaccgccacccc
atctcccctcaccactga
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