Pseudomonas iranensis: HU724_019445
Help
Entry
HU724_019445 CDS
T07894
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pie
Pseudomonas iranensis
Pathway
pie03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HU724_019445 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pie03400
]
HU724_019445 (mfd)
Enzymes [BR:
pie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HU724_019445 (mfd)
DNA repair and recombination proteins [BR:
pie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HU724_019445 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QXI21188
LinkDB
All DBs
Position
4328428..4331877
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAEAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRARLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVESVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVESGVGRERFPAHALPDL
AIEAKATQPLAALAGFLEEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLLLDDPALALVAESPLFGQRVMQRRRREKRSDVSNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDS
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQATIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEKLGIKKV
DGGPQGGRIEFEAQTPVDPMTLIKLIQTQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgttctgcgtctaccgctactccctgccgaagcaggtaaacagcactggggcaat
ctgcccggtgccgccctcagcctggcgattgccgaggctgccagcgctgccaagcgcttt
accctgctgctgaccgccgacagccaaagcgccgaacggctggaacaggagctgagtttc
ttcgccccggatttgcccgtactgcatttccccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctgtatcgcctgccggaa
ctggcccacggcgtgctggtggttccgatcaccaccgctttgcatcgcttggcgccgacc
aaattcctcctcggcagcagcctggtgctggacatcggccagaagctcgacgtcgaacag
atgcgcgcgcggctcgaagccagcggctatcgctatgtcgacacggtgtacgagcacggc
gagttcaccgtacgcggcgcgctgatcgacctgttccccatgggcagcaaactgccgtat
cgcatcgacctgttcgatgacgaaatcgaaaccctgcgcaccttcgatccggaaacccag
cgctcgatcgacaaggtcgagtcggtcaagctgctgccggcccgcgaattcccgttgcag
aaagacgcagtcacccgcttcaaggcgcgctttcgcgagcgcttcgacgtcgacttccgt
cgctgcccgatctttcaggatttgagcagcggtatcaccccggccggtatcgagtactac
ctgccgctgttcttcgacgaaacttcgacgctgttcgattacctgccccaggacacacaa
gtgttctcgctgccgggcatcgagcaggcggcggaaaacttctggaacgacgtgcgcaat
cgttatgaagaacgccgcgtcgatccatcgcgtcctttattgccaccggccgaactgttc
ctgccggtggaagactgcttcgcgcgcctgaagaactggccacgcgtcgttgccagtcaa
caggacgtagaaagtggcgtcggccgcgagcgcttcccggcgcacgcgctgccggatctg
gccatcgaagccaaggccacgcaaccactggcggcgctggccggcttcctcgaagaattc
cccggtcgcgtgctgttcaccgctgaatcggcgggtcgtcgcgaagtcctgctggaactg
ctggaacgcctgaagctgcggccgaaaaccgtcgacagctggccggacttcgtcgccagc
aaggatcgtctggcgatcaccatcgccccgctcgacgaaggtttgctgctcgacgacccg
gcgctggcgctggtggcggaaagtccgctgttcggccaacgggtcatgcaacgtcgtcgc
cgcgagaagcgcagcgacgtcagcaacgatgcggtgatcaagaacctcaccgaactgcgc
gaaggcgcgccggtggtgcatatcgaccacggtgtcgggcgctatctgggcctgacgatt
ctggaaatcgacaatcaggccgccgaattcctcaccctcgaatacgccgagaacgccaag
ctctacgtgccggtggccaacctgcacctgatcgcgcgctacaccggcagcgacgattcg
ctcgcgccgctgcaccgcctcggctcggaaacctggcagaaagccaagcgcaaagccgcc
gagcaggtgcgtgacgtcgccgccgaattgctcgacatctacgcccgtcgcgccgctcgt
gaaggttacgccttcgccgatcctaaggccgattacgccaccttcagcgccggtttcccg
ttcgaggaaacccccgaccagcaagcgaccatcgaggccgtgcgcgaagacatgctcgcg
ccgaaaccgatggatcgcctagtctgcggcgacgtcggcttcggcaagaccgaagtggcc
atgcgcgccgcgttcattgccgtgcacggcgggcgtcaggtggcgattctggtgccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgcttcaaatcggctaaggaagtcaacgcggcgatcgccgat
ctggcggaaggcaagatcgacatcgtcatcggcacgcacaaactgctgtccgatgatgtg
aagatcaaaaacctcgggctggtgatcatcgacgaagaacaccgctttggcgtacgccag
aaagaacagctcaaggccctgcgcagcgaggtcgacatcctcaccctgactgcgacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccaccagcgcgtcgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaagaggccctgctgcgtgaactgctgcgtggcggtcaggtttactacctgcacaacgat
gtgaagaccatcgaaaaatgcgccgccgacctcgccgaactggtgccggaagcgcgcatc
ggtatcggccacgggcagatgcgcgaacgtgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgaacgcgccgacaagttcggtctggcccagctgcaccag
ttgcgcggtcgtgtcggccgcagtcaccaccaggcttacgcctacctgctgacgccgccg
cgccagcagatcacttccgacgcggaaaagcgtctggaagcgatcgccaatacccaggac
ctcggtgccggtttcgtgctggccaccaacgacctggaaatccgtggcgccggcgaactg
ctcggcgatggccagagcgggcaaattcaggccgtcggtttcaccctgtacatggaaatg
ctcgagcgcgcggtgaagtcgatccgcaagggcgagcagccgaacctcgatcaaccgctg
ggcggcggcccggaagtcaatctgcgggtgccggcgctgattccggaagattacctgccg
gatgtacatgcgcggttgattctgtataaacgcatcgcctcggccaccgacgaggaaggc
ctcaaggatctgcaggtggagatgatcgaccgcttcggcctgttgccggagccgaccaag
aacctggtgcggatcaccgcgttgaaattgcaggcggaaaagctcggcatcaagaaagtc
gacggtgggccgcaaggcggacgtatcgagttcgaagcgcagacgccggttgacccgatg
accctgatcaagctgatccagacgcagcccaagcgctacaaattcgaaggcgcgacgatg
tttaaattccaggtgccgatggagcgcccggaagaacgtttcaatactgtcgaggcgctg
tttgagcgtctcatcccgaaatccgcttga
DBGET
integrated database retrieval system
