Pirellula sp. SH-Sr6A: VN12_10260
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Entry
VN12_10260 CDS
T04360
Symbol
sdrC
Name
(GenBank) Serine-aspartate repeat-containing protein C precursor
KO
K20276
large repetitive protein
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
VN12_10260 (sdrC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
Cadherin_5
SdrD_B
GEVED
Cadherin_4
CshA_repeat
Dockerin_1
Reprolysin_4
Peptidase_M10
Reprolysin_3
Motif
Other DBs
NCBI-ProteinID:
AMV32498
UniProt:
A0A142XZS2
LinkDB
All DBs
Position
2478781..2483859
Genome browser
AA seq
1692 aa
AA seq
DB search
MLSPRKFAAGKKFLQRWQKAKKRQAKRGIQLESLEKRELMAADFSPGVESALATMRIADP
AIRVQIGNMLTARYGGGSSTSSGTGGLSGESGAPFTTSEAEPNSVRSQANFLPFGIGPGK
NSVVNVNGQMNNNWDEDYFAFDLKKGDIIDIRANALGVVQPGLTLFNSAGRELLHSKQPF
YPPAVGRPIPDKSPRFTTGGSTLTYVIDTDGRYFLSINDASLNYSINMRAYRPTIEQEPI
GTKQKLFVDFDGAFLRSDVVGLNPTAVPSTVRIPGLSQALPQLGLTDADEPALIRNIMNR
VEQKLRLQLAQDSLNGWYSQTGNPGDFDIEILNSLEHPDVWGQPNVARMIVGGNAPQYGF
PAGLYGIAEWVDIGNFNREDTAVTFLDAAIFEAQTTPRAGNVPLADSFAQSIADTIVHEM
GHLLGVAHTSFTNNVITIMDGFLIDQIGQDGLFGTPDDQLLTFKNDEYELGETTAGGGVN
NTAQVVAWAAATGKVGSTISGLVYNDINRNARQDAGEAGIGGWEVYVDLNNNGSRELGEP
RATTAANGSYTLFVAAGTYNVRVTRPAGWVASTNAEVVKSVTVTTAGATANFGSSLPSNL
ATGFKWLDINGDGIKDSNEPGLAGVYIYLDLDGDDRPDVGEPASITKADGSYSLTPPSAG
VFTIREVVDAGYRQTFPASGEHIVSFDGITPLRGYDFGNTESADWGDAPSPYPTNRSQNG
AYHGQLSGLRLGVNWDAEQDGQPSTTATGDDVNGILDDEDGVSLLAPIVRGDNSNILQFN
ITNTTGSPAYLQGWVDFNGDGDWSDTGEQIVTNLMVSASGLQNVTFSAPANAVNRTYARF
RLSQTQNLGPAGRAGTGEVEDYVFDIVNGPRTLLQPDTATVARNSQSNVIDVIANDFALP
GESWRITGVSSGSRGGRVTIDTVNNRVLYTPALSFIGVDEFTYTAVTATGRSETARVTVN
VVAQFLDPVAVDDSFDVPTNSIGFPLNVLANDVEGAGGALVVTNVTTPDKGGSVTIGSGG
QSIRYTPRRDFGGTETFSYTATDATGKSTTAKITVHTIAGDRADDLVEFSFGFYNLAGEP
ITEIRQGEQFITRVFVDDLRPERGAAQVPPLFVTDPGVYAAYLDILYSSGLVAPASPTTN
NGLDFETAFFPPYQSGRDGSAAIPGIIDEFGAFAGSVPSMNFPNRVPLANIVFTATNPGL
AEFVGDPADRSPQSDVVFYNTTRSGVPIEEIRYGRSTLEVVPSGVNFPYAKDDSPARLPA
GQSSTIDVLANDIQGTQPPIRISSTTQPAGGQVQISDSGTPTNFSDDRIIYTPNTNFTGT
DSFKYTITDQRGFTSTATVTVQVGTEAQVQADDLVQLRLSITDLAGQEITQVTAGSKFQL
RGFVQDLRNNPVAAGVFAAYQDILYSSNLVSVDTQANAPFFQITYGPDYVNATSGDVRIA
GLINEVGSAQTSGAPLGTSERLQFVITMTANAAGVASFVGDPADIKPFNDTLLFNPTSPL
ATNQIRYLSDSLVIVGSGGTGGTGGGGGEGFTNLRNAFDVNDDGFVSPIDVLILVNSLNA
GGGGALSNNTDPGASGESTEHYYFDVNADTYLSPLDVLAVINVLNSRSASGGEGEDSSSA
PLVEANAPTNEFVEVPFQSNKLLDAAVATLYGPMMEEVEEDEEELLSLAAYLENQDSDEE
DLFDGLASALNG
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgttgagtccacgtaagttcgctgccggtaagaagttccttcaacgatggcagaaagcc
aagaagcgtcaagctaaacgaggaattcagcttgagtctctcgaaaagcgggaactgatg
gctgctgatttttctcctggtgtcgagtcggcgttagcgacaatgcgtatcgcggaccct
gccatccgagtccaaatcggaaacatgctcaccgcacgatatggcggcggtagctcgacc
tcgtcgggtacgggagggctttccggagaaagcggcgctccgttcaccacctcggaagcg
gaaccgaactccgtccgttcccaagccaactttttgccattcgggattggccctggcaag
aactcggtggtgaatgtcaacggtcagatgaacaacaactgggacgaagactactttgcc
ttcgatctgaagaagggggacatcatcgacatccgggccaatgctcttggtgtcgttcag
ccgggactcaccttgttcaattccgctggacgagagttgctccacagcaagcagcccttt
tatccgcccgcagttggtcgaccgattcccgacaagtctccgcgtttcacaacgggaggt
tccacgctcacttacgtgatcgacaccgatggtcgttacttcttgagcatcaatgatgcc
agcttgaactactccatcaatatgcgggcctatcgcccgacgatcgagcaagagccgatt
ggtaccaagcaaaaattgtttgtcgatttcgacggtgcgtttctccgttcggatgtcgtg
ggattgaatccgacggcggttccctccactgtccgtattccgggactttctcaagccctt
ccgcagttgggacttaccgatgcggacgagcctgctttgatccgcaacattatgaatcgg
gtcgaacaaaagcttcgattgcagctcgcacaggatagtttgaacggatggtattcccaa
accggtaaccctggcgactttgatatcgaaatcttgaacagtctggaacatccagacgtt
tggggacaacccaatgtggcccgcatgatcgtcggtggtaatgcgccccagtatggcttc
ccagcgggattatatggtatcgccgaatgggtcgacatcggtaacttcaaccgtgaggac
actgcagttacattcctggacgcggctattttcgaagcccaaaccacgccgcgagcagga
aacgttcctctggctgactcctttgctcagagtattgcggacacgatcgttcacgaaatg
ggtcacttgctcggtgttgcccacaccagctttaccaataatgtgatcacgatcatggac
ggtttcttgatcgatcaaatcgggcaggatggtttgtttggaacgccggacgaccaattg
ctgaccttcaaaaacgacgaatacgaactgggtgagacgactgcaggtggcggtgtcaac
aacacagcgcaagtcgtggcttgggcggcggcgacgggcaaggttggctcgaccatctcc
ggtctcgtttacaacgatatcaatcgcaacgctcgccaagacgcgggggaagcgggcatt
ggcggctgggaagtctacgtcgacctcaataacaacggctctcgcgagctaggcgaaccg
cgagccacgacggcggcaaatggttcgtacaccttgttcgtcgctgcaggcacttacaac
gttcgcgtcactcgacctgcaggctgggttgcgtcgaccaacgcagaggtcgtgaagtcc
gttactgtgaccaccgccggagcgaccgcaaactttggttcttcgcttccctccaacctg
gctacgggtttcaagtggttggatatcaatggcgacggtatcaaggattcgaatgaaccg
ggactggctggcgtctacatttacttggacctggatggcgacgaccgaccggacgtaggg
gaacccgcatccattaccaaggcggatggatcgtactccctcacaccaccatcggctggt
gtctttacaattcgagaagtggtcgatgctggctaccgacaaaccttccccgcatccgga
gaacacattgtgtccttcgacgggatcacgccattgcgtggctatgatttcggcaatacc
gagtcggctgactggggggatgcaccatctccgtatccaaccaatcgttcgcagaacgga
gcgtaccatggtcagctcagtggtcttcgtttgggagtgaactgggacgccgagcaagac
ggtcaaccatcgaccacagctaccggtgacgatgtcaacggaatcttggacgatgaagat
ggagtaagtctgctggcaccgatcgttcgcggagacaattcgaacattctccaattcaac
atcaccaacacgaccgggagccctgcttatctgcaaggttgggtcgatttcaatggtgac
ggcgattggagcgataccggcgagcagatcgttaccaatctcatggtttcggcgagcgga
ttgcaaaatgtaaccttctcggcacctgccaatgccgtgaatcgaacctacgctcgtttc
cgactttcccagacgcagaatcttggtccggccggacgagcgggtactggcgaagtcgaa
gattacgtgtttgacatcgttaacggtccccggactctgttgcagcccgatacggctacc
gtggctcgcaatagccaaagcaacgtgatcgatgtgatcgccaacgactttgcacttcca
ggggaaagctggcgaattaccggtgtgagctctggttcccgaggcggtcgggtcacaatc
gacacagtcaataatcgcgttctctatacccctgccttgagcttcatcggagtcgatgag
ttcacctacactgccgtgacggcaacggggcgttccgagacggctcgcgttacggtcaac
gtcgtcgcacagttcttggatccggtcgcggtcgatgattcgttcgacgttccaaccaac
tcgatcggcttcccgctcaacgttcttgcgaacgatgttgaaggtgctggcggagcattg
gtggttacgaacgtaacgactccagataagggtggttcggttaccattggttcgggagga
caaagcattcgctacacgcctcgccgcgattttggtggaacggaaacgttctcttacact
gcaaccgatgcgacgggcaagtccacgacagccaagattacagtgcacaccatcgcagga
gaccgcgccgatgatttggttgaattcagcttcggcttctacaacctcgctggcgagccg
atcactgaaattcgtcaaggtgagcagttcatcactcgcgtttttgtcgacgatctacgt
ccggagcgtggagctgcccaagttcctcctctgtttgtaacggatcccggcgtttacgct
gcttacttggacatcctttacagttccggattggtggcacctgcgtccccaactacgaac
aatggtttggactttgagaccgcgttcttcccaccctatcaatcagggcgtgacggatca
gcggccatccctggaatcatcgacgagtttggtgcattcgcaggttccgtaccttcgatg
aatttccccaatcgtgttcctttggccaacattgtcttcacggcaacaaatcccggtctc
gctgaatttgtcggcgatcctgccgatcgatcgccgcaaagcgatgttgttttctacaat
accacacgatccggggttcccatcgaagaaattcggtacggtcgctcgaccctcgaagtg
gtacccagcggagtgaacttcccttatgccaaggatgattcgccggctcgattgccagcg
ggtcagtcgtcgaccatcgatgtgctggcgaatgacattcaaggaactcagccaccgatc
cgaatctcgtccaccacgcaacctgcgggaggtcaagttcagatctcggatagtggaact
ccgaccaacttctccgacgatcggatcatctacactccgaatacgaacttcacaggtacc
gattccttcaagtacacgatcaccgatcaacgaggcttcacctcgacggcaacggtgacg
gttcaagtgggaaccgaggcacaggtccaagcggatgacttggttcaacttcggctctcg
atcaccgatttggcgggtcaagagattacgcaggtcaccgctggttcgaagttccaactg
cgaggattcgtccaagaccttcgcaacaatccagttgcagcaggggtttttgcggcctac
caagacatcctttacagttcgaatttggtttcggtcgacactcaagcgaatgcaccattc
ttccaaatcacctatggtcctgactatgtcaatgcgacctcgggagatgttcgcatcgct
ggattgatcaatgaagttggttcagcacaaacgagcggtgcccccctcgggacttccgag
cgattgcaattcgtaatcaccatgactgcgaacgcggcaggggtagcatccttcgtcgga
gatccggctgacatcaagccgttcaatgacacccttctgtttaacccaaccagcccactt
gccaccaatcagattcgatatctatcggattccctggtgatcgtgggcagtggcgggacc
ggtggaacgggcggaggtggcggtgaaggcttcaccaatctccgtaacgcgttcgacgtg
aacgacgatggattcgtttctccgatcgacgtactgatcttggtcaactcgttgaatgcg
ggcggtggcggggcgttgtcgaacaacaccgatcctggcgcatccggagaatcgaccgag
cattattacttcgacgtgaacgcggatacctatctgagcccgctcgacgttttggctgtg
atcaacgtgttgaactctcgctcggcatcgggcggtgaaggggaagactctagcagcgca
ccattggtggaagccaacgcaccaaccaatgagttcgtcgaagttcccttccagtccaac
aaactcctcgatgcggctgtcgcaaccctttacggtccgatgatggaagaagtcgaagag
gacgaggaagagctgttgagcttagccgcttacctggagaaccaagattccgatgaggaa
gatctctttgatggcttagcatctgctctcaatggctga
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integrated database retrieval system
