Pseudomonas izuensis: LAB08_R16830
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Entry
LAB08_R16830 CDS
T08555
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
piz
Pseudomonas izuensis
Pathway
piz00071
Fatty acid degradation
piz00280
Valine, leucine and isoleucine degradation
piz00310
Lysine degradation
piz00362
Benzoate degradation
piz00380
Tryptophan metabolism
piz00410
beta-Alanine metabolism
piz00640
Propanoate metabolism
piz00650
Butanoate metabolism
piz00907
Pinene, camphor and geraniol degradation
piz00930
Caprolactam degradation
piz01100
Metabolic pathways
piz01110
Biosynthesis of secondary metabolites
piz01120
Microbial metabolism in diverse environments
piz01200
Carbon metabolism
piz01212
Fatty acid metabolism
Module
piz_M00087
beta-Oxidation
piz_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
LAB08_R16830 (fadB)
00650 Butanoate metabolism
LAB08_R16830 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
LAB08_R16830 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
LAB08_R16830 (fadB)
00310 Lysine degradation
LAB08_R16830 (fadB)
00380 Tryptophan metabolism
LAB08_R16830 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
LAB08_R16830 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
LAB08_R16830 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
LAB08_R16830 (fadB)
00930 Caprolactam degradation
LAB08_R16830 (fadB)
Enzymes [BR:
piz01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
LAB08_R16830 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
LAB08_R16830 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
LAB08_R16830 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
LAB08_R16830 (fadB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
BCX67059
LinkDB
All DBs
Position
1870085..1872232
Genome browser
AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVDTIKADASIKGVIVSS
GKDVFIVGADITEFVDNFKLPDAELVAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLE
MCLAADYRVMSTKAKIGLPEVKLGIYPGFGGTVRLPRLIGADNAIEWIAAGKENRPEDAL
KVGAVDAVVAPEKLQDAALELIKRAISGEFDYKAKRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFVKLAKTSAAQSLIGLFLNDQEL
KKKAKAYDEIAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL
LVGRVDKGRMTAAKMAEVLNGIRPTLSYGDFGHVDLVVEAVVENPKVKQAVLAEVEAQVK
EGTILASNTSTISISLLAKALKHPENFVGMHFFNPVHMMPLVEVIRGEKSSELAVATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDNSRSAVDVLYEAKRLGQKNGKGFYAYETDKKGKQ
KKVADPSVLEVLKPIVFEQREVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAQFVALADQYADLGALYHPTAKLREMAKNGQSFFG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagtggcatcgtcgaactg
aagttcgacctcaagggtgagtccgtcaacaagttcaaccgtctaaccctgaacgaactg
cgtcaggccgtggacaccatcaaggcagatgcttcgatcaagggtgtgatcgtcagcagt
ggcaaggacgtcttcatcgtcggcgccgacatcaccgaatttgtcgacaacttcaagctg
ccggatgcagagcttgttgcaggcaacctggaagccaacaagattttcagcgatttcgaa
gacctcaacgtcccgactgtcgccgcaatcaacggcatcgcgttgggtggcggtctggag
atgtgcctggcggcggattaccgcgtcatgtccaccaaggccaagatcggtctgccggaa
gtcaagctgggcatctacccgggcttcggcggtaccgtgcgtctgccgcgcctgatcggt
gccgacaacgccatcgagtggattgccgccggcaaggaaaaccgtcctgaagacgcgctg
aaagtcggcgccgtcgatgccgtggtcgcgcctgaaaaactgcaggacgccgcgctggaa
ctgatcaagcgcgccatttccggcgaattcgattacaaggccaagcgccagccgaagctt
gaaaagctcaagctgaacgccatcgaacaaatgatggctttcgaaaccgccaaaggtttc
gtggcaggccaggctggcccgaactacccggcgccggtcgaagcaatcaagaccatccag
aaagccgcgaacttcggtcgcgacaaggcactggaagtcgaagccgccggtttcgtgaaa
ctggccaagacctctgccgcgcagagcttgatcggtctgttcctgaacgaccaggagctg
aagaaaaaagccaaggcctacgacgaaatcgccaaggacgtgaagcaggccgccgtattg
ggcgccggcatcatgggtggcggtattgcctatcagtcggcctccaagggcacgccgatc
ctgatgaaggacattaacgagcacggtatcgagcagggcctggccgaagccgccaagctg
ctggttggccgcgttgataaaggccgcatgaccgccgcgaaaatggccgaagtgctcaac
ggcattcgtccgaccctgtcctacggcgacttcggtcacgtggacctggtggtcgaagca
gtcgtcgagaacccgaaggtcaagcaagccgttctggctgaagtcgaagctcaggtcaaa
gaaggcaccatccttgcctcgaacacctcgaccatttccatcagcctgctggccaaggcc
ctcaagcacccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggtggaagtgatccgtggcgagaagtccagcgagttggcggttgccaccaccgttgcc
tacgccaagaaaatgggcaagaacccgatcgtggtcaacgactgcccgggcttcctggtc
aaccgcgtactgttcccttacttcggtggtttcgccaagttggtcagcgccggtgtggac
ttcgtccgtatcgacaaggtcatggaaaaattcggctggccgatgggcccggcgtacctg
atggacgtggtcggcatcgacaccggccaccacggtcgtgacgtaatggctgaaggcttc
ccggaccgcatgaaagataacagccgctcggccgtagacgtgctctacgaagccaagcgc
ctgggccagaagaacggcaagggcttctacgcctacgagaccgacaagaagggcaagcag
aagaaagtcgccgatccgtcggtactggaagtgctcaagccaatcgtgttcgagcagcgc
gaagtcactgacgaagacatcatcaactggatgatgatcccgctgtgcctggaaaccgtg
cgttgcctggaagacggcattgtcgaaaccgctgccgaagccgacatgggtctggtctac
ggtattggtttccctccattccgtggtggtgcgctgcgctacatcgactcgatcggtgtt
gcacagttcgttgccctggctgaccagtacgctgatttgggtgcgctgtaccacccgacc
gcgaagctgcgcgaaatggccaaaaacggccagagcttcttcggttaa
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