Pseudomonas izuensis: LAB08_R16860
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Entry
LAB08_R16860 CDS
T08555
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
piz
Pseudomonas izuensis
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
piz03032
]
LAB08_R16860 (topA)
03400 DNA repair and recombination proteins [BR:
piz03400
]
LAB08_R16860 (topA)
Enzymes [BR:
piz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LAB08_R16860 (topA)
DNA replication proteins [BR:
piz03032
]
Prokaryotic type
DNA Topoisomerases
LAB08_R16860 (topA)
DNA repair and recombination proteins [BR:
piz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LAB08_R16860 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BCX67062
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Position
1873888..1876515
Genome browser
AA seq
875 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKEKARKQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAT
VRFDVAREKGEAFKPLNETQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARTYIEGEFGKKYLPDTPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
TVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDAMKLIKLDPTQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLAES
FSHLMDYGFTAGMEEHLDDVAQGERDWKNVLDEFYGDFKKKLEVAEGAENGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCDGYEIEEGVYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVMEIIPHKDEIDPKYHFLCEAPKKDPDGLPAVIRYSRKTK
EQYVQTEVDGKPTGWKAYYDGGKWTVEDKRPAAKA
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ttgggcaacgaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaagagccagccgccaagcgcggcaaggctgctgcgggtgaa
gcgccggcactgtcgccgaaagaaaaggcgcgcaagcagctggtcgctcgcatgggggtc
gatcccgatcatggctggaaagccaagtacgagatccttccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgctgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggtgacgacagccgc
tacaagcgcgtggtgttcaacgagatcaccaagaaggcgatccaggaagctttctcccag
ccaggcgagctggacatcgatcgtgtcaacgcccagcaggcgcgtcgattcctcgaccgt
gtagtgggctacatggtttcgccgctattgtgggccaagatcgcccgtggcctgtccgcc
ggccgcgtgcagtcggttgcggtcaaactggtggtcgagcgtgagcgtgaaattcgcgcg
ttcatcccggaagagtactgggaagtgcacgccgatctcggcaccgccaaaggcgcgacc
gtgcgtttcgacgtcgctcgcgagaagggtgaggcgttcaagccgcttaacgaaacccag
gccatggccgcgctggagaagctcaaggcttccagctacagcatcgtcaagcgtgaagac
aagccgaccagcagcaagccatcggcaccgttcatcacttccaccctgcaacaggccgcg
agcaaccgcctgggcttcggtgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacttatatgcgtaccgactccaccaacctctcggctgatgccgtggcg
atggcgcgtacttatattgaaggcgagttcggcaagaaatacctgccggacaccccgaac
gtctacagcagcaaggaaggcgcacaggaggctcacgaagcgattcgtccgtccgacgcc
aataccgagccgagcaagctgtcgggcatggagcgtgacgcagagcggctctacgagctg
atctggcgccagttcctcgcttgccagatgttgccggcgcaatacctgtcgactacggtc
actgtcggtgccggcgatttcgagttgcgtgccaagggccgtatcctcaaattcgacggt
tacacccgtgtcatgccgcaaatcgccaagccgggcgacgacgatgtactgccggacatg
gcccagggcgacgcgatgaagctgatcaagcttgatccgacccagcacttcaccaagcca
cctgcgcgttactcggaagccagcctggtaaaagaaatggaaaaacgcggcattggtcgt
ccttcgacctacgcggcgatcatttcgaccatccaggaccgcggctacgtggcgctgcac
aaccgtcgtttctattcggaaaagatgggcgatatcgtcaccgagcgtctggccgaaagc
ttctctcatctcatggactacggcttcaccgcgggcatggaagagcatctcgatgacgtg
gcccagggcgagcgcgactggaaaaacgtgctcgacgagttctacggcgacttcaagaaa
aaactcgaagtggccgaaggtgcggaaaacggcatgcgtgccaatcagccggtgatgact
gacattccgtgcacgacctgcggtcgcccgatgcagattcgtaccgcgtcgaccggtgtg
ttcctcggttgctcgggctacagcctgccaccgaaagaacgctgcaaggccaccgtcaac
ctggtgccgggcgatgaaatcgctgcggacgatgaaggtgagtcggagtcgctggtactg
cgtggcaagcatcgctgcccgatctgcagcacggcgatggacgcctacctgctcgatgag
aagcgcaagctgcacatctgcggtaataacccggattgcgatggctacgaaatcgaagaa
ggtgtctatcgcatcaagggctatgagggtccgagcctggaatgcgacaagtgcggcagc
gagatgcagctcaagaccggccgcttcggcaagttcttcggttgcaccaatccgacctgc
aagaacacccgcaaactgctgaaaagcggtgatgcggcgccgccgaagatggacccggtg
aagatgcctgagctgaaatgcgaaaaggtcaacgacacctacatcctgcgcgacggtgct
tcaggtctgttcctggcagctagccagttcccgaaaaaccgcgagacccgcgctccgttg
gtcatggaaatcattccgcacaaggatgagatcgatccgaagtaccacttcctttgtgaa
gcaccgaagaaagacccggatggcctccctgcggtgatccgatatagccgcaagaccaag
gagcaatacgtgcagacggaagtcgacggaaagcctacgggctggaaggcgtactacgac
ggcggcaagtggaccgttgaagacaagcgtccggcagccaaggcttaa
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