Pseudomonas juntendi: L1P09_07940
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Entry
L1P09_07940 CDS
T08267
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pju
Pseudomonas juntendi
Pathway
pju03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pju00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L1P09_07940 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pju03400
]
L1P09_07940 (mfd)
Enzymes [BR:
pju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L1P09_07940 (mfd)
DNA repair and recombination proteins [BR:
pju03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L1P09_07940 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UJM14106
LinkDB
All DBs
Position
complement(1732514..1735963)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF
FAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPVTTALHRLAPT
RFLLGSSLVLDVGQTLDVEQMRTRLEATGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKDEVTRFKARFRERFDVDFR
RSAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPADTQVFSLPGVEQAAEHFWNDVRG
RYEDRRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSDDLEAGAGRERFPARALPNL
AIEAKANQPLAELASFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVDGWHDFITG
AERLAIAIAPLDEGLLLDDPAIALVAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFP
FEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLQAEKLGIKKV
DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEAL
FERLTPQPA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaac
ctgcccggtgccgccctcagccttgccatcgccgaggccgccagcagcgctggccgcttc
accctgttattgacggccgacagccaggccgccgaccgcctggaacaggagctgcgtttc
ttcgcacccgacctgccggtgctgccgtttcccgattgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctttaccgcttgcctgag
ctgagccacggcatcctcgtggtgccggtgaccaccgccctgcaccgcctggcacccacg
cgttttctgctgggcagcagcctggtgctggacgtgggccagaccctcgacgtggagcag
atgcgcacgcggctggaagccaccggctaccgctgcgtcgacacggtctatgagcatggc
gagttcgccgtgcgcggtgcactgatcgacctgttccccatgggcagcaagctgccctac
cgcatcgacctgttcgatgacgagatcgagaccctgcgcaccttcgaccccgagacccag
cgctcgatagacaaggtggattccgtgcgcctgctgcctgcgcgcgaattccccatgcaa
aaggacgaagtgacccgcttcaaggcacgctttcgcgaacgcttcgacgtcgacttccgc
cgcagcgcgatcttccaggacctggccagcggtatcatccccgccggtatcgagtactac
ctgcccttgttcttcgaagaaacctccaccctgttcgactacctgccggcggacacccag
gtgttttcgctgccgggggtggaacaggccgccgaacacttctggaacgacgtgcgcggg
cgttatgaagaccgccgtggcgatctcagccggccactgctgccaccggccgagctgttc
ctgccggtcgaagactgcttcgcccggctcaagcagtggccgcgggtggttgtcagcagc
gacgacctggaagccggcgcagggcgcgagcgcttcccggcgcgcgccctgcccaacctg
gcgatcgaggccaaggccaaccagccactggccgagctggccagcttcctcgaccagttc
cccggccgcgtgctgttcaccgctgaatcggcgggccgacgcgaggtattgctggagctg
ctcgaacggctgaagctgcgcccgcacaccgttgatggctggcacgatttcatcaccggt
gccgagcgcctggccatcgccatcgccccactggacgaaggcctgctgctggacgacccg
gccattgccctggtcgccgaaagcccgttgttcggccagcgcgtcatgcagcgccggcgc
cgtgacaaacgtggcgaaaccgccaatgacgcggtaatcaagaaccttaccgaactgcgc
gaaggcgcaccggtggtgcacattgaccacggcgtaggccgctacctgggcctggccacg
ctggaaatcgacggccaggctgcagaattcctgaccctggaatatgccgaaaacgccaag
ctttatgtgccggtcgccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcaccgctgcaccggctgggttcggaagcctggcaaaaggccaagcgcaaggctgcc
gaacaagtccgcgacgtggccgccgaactgctcgacatctacgcccggcgtgccgcgcgc
aaaggctacgccttcgccgacccgtccgccgactacgccacgttcagcgccggcttcccg
ttcgaggaaacccccgaccagcaggccgccatcgaagccgtgcgcgccgacatgcttgcg
cccaagccgatggaccgcctggtctgtggcgatgtgggcttcggcaagaccgaagtggct
atgcgcgcggcgttcattgccgtgcacagcggccgccaggtggcggtattggtgccgacc
accctgctcgcccaacagcactacaacagcttccgcgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgtttcaagtccgccaaggaagtcgccgccgccgccgcagac
ctggccgagggcaagatcgacatcctgatcggcacccacaagctgctgcaggacgacgta
cgcttcaaggacctgggcctggcaatcatcgacgaagagcaccgttttggcgtacgccag
aaggagcagctcaaggccctgcgcagcgaagtcgacatcctcaccctcaccgccaccccc
atcccgcgcacgctcaacatggcggtggcgggcatgcgcgacctgtccatcatcgccacg
ccgccggcgcgccgcctgtcagtgcgcaccttcgtcatggagcagaacaagagcaccgtc
aaagaggcgctgctgcgcgaactgctgcgcggcggccaggtgtactacctgcacaacgat
gtgaaaaccatcgagaaatgcgcagccgacctcgccgaactggtacccgaggcacgcatc
ggcatcggccatgggcaaatgcgcgagcgtgaactggaacaggtgatgagcgatttctac
cacaagcgcttcaatgtgctggtggcttcgaccatcatcgaaaccggtatcgacgtgccc
agcgccaacaccatcgtcatcgaacgcgccgacaagttcggcctggcccagctgcaccag
ctgcgcggccgggttggccgcagccaccaccaggcttacgcctacctgctcacgcccacc
cggcagaaggtcagcgccgacgccgaaaagcgcctggaagcgatcgccaacacccaggac
cttggcgccgggttcgtgctggcgaccaacgacctggaaatccgcggtgccggcgagctg
ctgggcgaaggccagagtgggcagatccaggccgttggcttcaccctgtacatggaaatg
ctcgagcgcgcagtcaaggccattcgcaagggcacccagcccaacctggaacagccactg
ggcggcggcccggagatcaacctgcgcctgccggcgctgatccccgaagactacctgccc
gatgtgcatgccaggctgatcctgtacaagcgcattgcctcggcggccgacgaagagggc
ctcaaggacctgcaggtcgaaatgatcgaccgcttcggcctgctaccggaacccaccaag
aatctcatgcgcctgacgtcgctcaagctgcaggcggaaaagctcggcatcaagaaagtc
gatgccggccccaatggcggcaagctcgagttcgaggccgaaaccccggtagacccactg
accttgatcaaattgattcagggccagcccaaacgctacaagttcgaaggcgcgacccag
ttccgcttcctggtgccaatggagcgcccggacgaacgcttcaacaccttggaggcgctg
ttcgagcgcctgaccccacagcctgcctaa
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