Plantactinospora sp. BC1: C6361_19375
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Entry
C6361_19375 CDS
T05377
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
plab
Plantactinospora sp. BC1
Pathway
plab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
plab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C6361_19375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plab03400
]
C6361_19375
Enzymes [BR:
plab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C6361_19375
DNA repair and recombination proteins [BR:
plab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C6361_19375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AVT31283
LinkDB
All DBs
Position
4450323..4451240
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AA seq
305 aa
AA seq
DB search
MAREQRVRVEVEGRSLELSNLDKVLYPASGFTKGEVIDYYTRVSEALLPHLRDRALTRIR
YPNGVDGNFFFEKNAPASTPDWVRLERLPAPGSTKGREMLDYVVCDDLATLVWLANLAAL
ELHTPQWQVGAHPDLMVMDLDPGAPAGLVECCGVALLIRERLAADGIASYPKTSGKKGMQ
LSCPVSGGQSADVVSGYARRIAEELAREAPKSITAQMAKRLRPGKIFIDWSQNNAAKTTV
APYSLRAQPTPSVSTPLTWAEVEAAADGEAGAVRQFPAAEVLDRIEEYGDLLIELLDGGP
ELPVR
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtgaacagcgggtacgggtcgaggtcgagggccgcagcctcgaactgtccaat
ctggacaaggtgctctatccggcgtccgggttcaccaagggtgaggtgatcgactactac
acccgggtctccgaggcgctgctgccgcacctgcgggaccgggcgctgacccggatccgc
taccccaacggcgtcgacgggaacttcttcttcgagaagaacgccccggccagcaccccg
gactgggtacgcctggagcggctgcccgcccccggctccaccaagggccgggagatgctc
gactacgtcgtctgcgacgacctggcgacgctggtctggctggccaacctcgccgcgctg
gaactgcacaccccgcagtggcaggtcggcgcccaccccgacctgatggtgatggacctc
gacccgggcgccccggccggcctggtcgagtgctgcggggtcgcgctgctgatccgggaa
cgcctcgccgccgacggcatcgccagctatccgaagacctccggcaagaagggcatgcag
ctctcctgcccggtctccggcgggcagtccgccgacgtcgtctccggctacgcccgccgg
atcgccgaggaactcgcccgcgaggcaccgaagtcgatcaccgcccagatggcgaagcgg
ctccgccccggcaagatcttcatcgactggagccagaacaacgcggcgaagacgacggtg
gcgccgtactcgctgcgggcccagccgacgccgtcggtctccaccccgctgacctgggcc
gaggtggaggcagccgccgacggggaggcgggcgccgtccgccagttccccgccgccgag
gtgctggaccggatcgaggagtacggcgacctgctgatcgaactgctcgacggcggcccg
gagctgccggtccggtga
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