Pseudomonas lalkuanensis: FXN65_09825
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Entry
FXN65_09825 CDS
T07120
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
plal
Pseudomonas lalkuanensis
Brite
KEGG Orthology (KO) [BR:
plal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plal03032
]
FXN65_09825 (topA)
03400 DNA repair and recombination proteins [BR:
plal03400
]
FXN65_09825 (topA)
Enzymes [BR:
plal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FXN65_09825 (topA)
DNA replication proteins [BR:
plal03032
]
Prokaryotic type
DNA Topoisomerases
FXN65_09825 (topA)
DNA repair and recombination proteins [BR:
plal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FXN65_09825 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
QEY62352
UniProt:
A0A5J6QL36
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All DBs
Position
2091565..2094171
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AA seq
868 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSTSAAKEPAKRGKTAGEAP
ALSAKEKAKRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDRE
GEAIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFSQPGDLDINRVNAQQARRFLDRVV
GYMVSPLLWQKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLGTAKGAKVR
FEVARENGEAFKPLNEAQAMAALEKLKASSYTVAKREDKPTSSRPSAPFITSTLQQAASN
RLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAIAMVRGFIEGEFGQKYLPSKANVY
SSKEGAQEAHEAIRPSDVNLRPNQLSGMERDAERLYDLIWRQFVACQMPPAEYLSTSVSV
TASKFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMSEGELLELLKLEPSQHFTKPPA
RYSEASLVKELEKRGIGRPSTYAAIISTIQERGYVTVHNRRFYAEKMGDIVTERLNESFA
NLMDYGFTAGMEEHLDDVAQGERDWKHLLDEFYGDFRKKLELAEGTDKGMRANQPTLTDI
PCRECGRPMMIRTASTGVFLGCSGYSLPPKERCKATINLVPGDEIAADDEGESESRVLRG
KHRCPICATAMDAYLLDETRKLHICGNNPDCSGYEIEQGQYRIKGYEGPSLECDKCGSEM
QLKTGRFGKFFGCTNASCKNTRKLLKSGEAAPPKIDPIRMPELKCEKVDDIYVLRDGASG
LFLAASQFPKNRETRAPLVQELIPHKDELDAKYHYLLDAPKKDPEGRPAVIRFSRKTKEQ
YVQTEVDGKPTGWRAFFDGGKWKVEDKR
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggccaaggccaagaccatcaacaagtac
ctgggcaaccagtacgtggtgaagtcgagcatcggccacatccgtgaccttcccaccagc
ggttcgaccagtgccgccaaggaaccggccaagcgcggcaagaccgccggcgaagcgccg
gccctgtccgccaaggaaaaggccaagcgccagctggttgcgcgcatgggcgtcgatccc
gatcacggctggaaggcgaagtacgagatccttcccggcaaggaaaaggtgatcgaggaa
ctgcgccgtctggccaaggatgccgacaccatctatctcgcaaccgacttggaccgcgaa
ggggaggccatcgcctggcacctgcgggaatccatcggtggcgatgacagtcgctacaag
cgcgtggtgttcaacgaaatcaccaagaaggccatccaggaagccttctcccaacccggc
gatctcgacatcaaccgcgtcaacgcccagcaagctcgccgtttcctcgaccgcgtggtg
ggttacatggtctcgccgctactctggcagaagatcgcccgtggcctgtccgctggccgt
gtgcagtcggtggcggtgaaactggtggttgagcgcgagcgcgaaatccgtgctttcgta
cccgaagagtattgggaagtgcatgccgacctcggcactgccaagggcgccaaagttcgt
ttcgaagtggcgcgtgagaacggtgaggccttcaagccgctgaacgaagcccaggccatg
gccgccctggagaagctcaaggcttccagctacaccgttgccaagcgtgaggacaagccg
acctccagtcgtccgtccgcgcccttcattacctccaccctgcagcaggccgcgagcaac
cgcctgggcttcggggtgaagaagaccatgatgatggcccagcgcctctatgaggccggc
tacatcacctatatgcgtaccgactcgaccaacctttccgccgacgccattgccatggtg
cgtggtttcatcgagggcgagttcggtcagaaatacctgccgtccaaggcgaacgtctac
tccagcaaggaaggcgcccaggaggcccacgaggcgatccgtccctccgacgtcaacctg
cggccgaaccagctgtctggcatggaacgtgatgccgagcgtctgtacgacctgatctgg
cgccagttcgtggcgtgccagatgccgccggccgagtatctgtctaccagtgtcagcgtc
accgccagcaagttcgagctgcgcgccaagggccgcattctcaagttcgacggttacacc
cgcgtactgccgcagcagagcaagccgggcgaggacgatgtcctgccagaaatgagcgag
ggcgaactgctcgaactgctcaagctcgagcccagccagcacttcaccaagccgccggcg
cgctactccgaagccagcctggtcaaggaactggaaaaacgtggcatcggccgtccgtcc
acttacgcggcgatcatctccaccattcaggagcgcggctacgtcaccgtgcacaaccgt
cgtttctacgcggagaagatgggcgacatcgttaccgagcgcctgaacgaaagcttcgcc
aacctgatggactacggcttcaccgccggcatggaagagcatctggacgacgtcgcacag
ggcgagcgcgactggaagcacctgctggacgagttctatggcgacttcaggaagaagttg
gagctggccgaaggcaccgacaagggcatgcgcgccaatcagcctacgctgaccgatatt
ccctgtcgcgagtgcggtcgtccgatgatgatccgtaccgcctcgaccggcgtgttcctc
ggttgctcgggctacagcctgccgccgaaggagcgctgcaaggccaccatcaacctcgtg
ccgggcgacgaaatcgccgcggacgacgagggtgaatcggagtcccgcgttttgcggggc
aagcatcgctgcccgatctgcgcgactgctatggatgcttatctgctggatgaaacccgc
aaactgcatatctgcggcaacaacccggattgctcgggttacgagatcgagcagggccag
taccgcatcaagggctacgaaggtccgagcctggagtgcgacaagtgcggtagcgagatg
cagctcaagacagggcgcttcggcaagttcttcggctgcaccaacgccagttgcaagaac
acccgcaagctgctgaagagcggcgaggctgcgccgccgaagatcgatccgattcgcatg
ccggaactgaagtgcgagaaggtcgacgatatctatgtgctgcgcgatggcgcttccggc
ctgttcctggctgccagccagttcccgaagaaccgagaaacccgtgcaccgctggtacag
gaactgatcccgcacaaggatgagctggacgcgaagtatcactacctgctcgacgcgccg
aagaaggaccccgagggacgtccggcggtaattcgcttcagtcgcaagacaaaggagcag
tacgtgcagaccgaggtggacggcaagcccaccggctggcgtgccttcttcgatggcggc
aagtggaaggtcgaagacaagcgctga
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