Candidatus Planktophila lacus: A1s21148_01400
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Entry
A1s21148_01400 CDS
T05050
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
plan
Candidatus Planktophila lacus
Pathway
plan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A1s21148_01400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plan03021
]
A1s21148_01400
03019 Messenger RNA biogenesis [BR:
plan03019
]
A1s21148_01400
Transcription machinery [BR:
plan03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A1s21148_01400
Messenger RNA biogenesis [BR:
plan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A1s21148_01400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
AAA_22
PIP5K
FDF
CDC45
Motif
Other DBs
NCBI-ProteinID:
ASY11302
LinkDB
All DBs
Position
282642..284219
Genome browser
AA seq
525 aa
AA seq
DB search
MTDQDQEVTPVRSNSPELAAMSLPKLKEVAAQLGIDGAAKLKKDALVTAIADLQAANREA
AKAEREARREARNAKKNSNRENANNSSNSANDSDDDGEENVNDNGPRDNDRGFGGRDRGR
GRDRNRGRDRNRDRGQREEREPVIGEDDVLVPVGGLVDIMDNYSFIRTGGYLPGPNDVYV
SQQQVRKYGLRKGDVVTGQVRQAREGEQRQKYNPLITLETINGVTPEEARGRVEFGKLVP
LYPQERLRLETEPNILTTRVIDLIAPIGKGQRGLIVSPPKAGKTMVLQSIANAITTNNPE
CHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPADDHTTIAELAIERAKRLVELGHDVV
VLLDSITRLGRAYNIAAPASGRILSGGVDSAALYPPKKFFGAARNIEDGGSLTILATALV
DTGSRMDEVIFEEFKGTGNMELILDRKMADKRIFPAVNVVASGTRKEEILMGTEELNIVW
KLRRVLHALEPQAALELLLEKMKGTKSNVEFLMQIQKTTSGPNEG
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcaagatcaggaagtaacgccagtacgctcaaattcaccagagcttgccgcg
atgagtcttccaaagttaaaagaagttgctgcacagctcggtatcgatggcgctgcaaag
ttaaagaaggatgcgctcgtaaccgcaatcgctgatctacaggcagcaaaccgcgaagcc
gcaaaggccgaacgcgaagcccgccgcgaagcgcgcaatgcaaagaagaattccaatcgt
gaaaacgcgaacaactcatcaaactcagctaacgattcagatgacgatggcgaagaaaac
gtgaacgataacggaccacgcgataacgatcgtggctttggtggacgcgaccgcggtcgt
ggccgtgatcgcaaccgtggccgtgatcgcaaccgtgatcgtggacaacgcgaagagcgc
gagcctgtaattggcgaagatgatgttctagttcctgttggcggcctagtcgacatcatg
gataactattcatttatccgcaccggtggctacctacctggtccaaacgatgtctatgtt
tcacagcagcaagtacgcaagtacgggcttcgcaagggcgatgttgttacaggccaagtg
cgtcaggcgcgcgaaggcgaacaacgccagaagtacaacccactaattacccttgaaaca
ataaatggagtaactcctgaagaagcgcgcggacgcgttgaattcggcaagttagttccg
ttatacccacaagagcgtctgcgtcttgagaccgaaccaaacattcttactactcgcgtt
atcgatctgattgcgccaatcggtaaaggccagcgcggacttatcgtttcgcctccaaag
gccggtaagaccatggtcttgcaatcaattgcaaatgcgatcactacaaataatccagag
tgtcacttaatggttgttctagttgatgagcgcccagaagaagttaccgatatgcagcgc
tctgttaagggtgaagtaatcgcatcaacattcgatcgtccagccgatgatcacaccaca
attgcagagctcgctattgagcgcgcaaagcgtttggttgaactcggtcacgatgtagtc
gttctccttgactctattactcgtctaggtcgcgcctacaacatcgcagcacctgcatca
ggtcgcatcctttcgggtggtgttgattcagctgctctatatccaccaaagaagttcttc
ggtgccgcacgtaatattgaagatggcggatcgctaacaattcttgcaactgcacttgtt
gataccggttcacgtatggacgaagttatcttcgaagagttcaagggcaccggaaatatg
gagctcatcctcgatcgcaagatggccgataagcgcatcttccctgctgttaacgttgtt
gcatcaggtactcgtaaggaagaaattcttatgggaactgaagaactcaacattgtctgg
aagttacgccgcgtgcttcatgcacttgaaccacaagcagcgcttgagttgttgcttgag
aagatgaagggcactaagtccaacgtcgagttcttgatgcagatccagaagaccacttct
ggtccaaacgagggctaa
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