Candidatus Portiera aleyrodidarum AD-CAI: PAD_036
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Entry
PAD_036 CDS
T03737
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
plc
Candidatus Portiera aleyrodidarum AD-CAI
Pathway
plc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAD_036 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plc03019
]
PAD_036 (rne)
03009 Ribosome biogenesis [BR:
plc03009
]
PAD_036 (rne)
Enzymes [BR:
plc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PAD_036 (rne)
Messenger RNA biogenesis [BR:
plc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PAD_036 (rne)
Ribosome biogenesis [BR:
plc03009
]
Prokaryotic type
rRNA processing factors
PAD_036 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
CEI58586
UniProt:
A0A8D9NAY1
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Position
I:complement(38851..40506)
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AA seq
551 aa
AA seq
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MKRILINATQPEELRVALVDGQFLYDLDIEFCTKEQKKSNIYRAKIVRIEPSLEAAFVDF
GAERHGFLPLKEIANEYLLNNCNCNYNIRNLLKEGQEIIVQVDKEERSNKGAALTTYISL
AGRFLVLMPNNHRSVGISRRITGYDRFRLKEAINKLFIPNNMGIIVRTAGIARSSKDLQC
DLNYLIQIWEAITEEANKRYAPFLIYRESNVIIRGMRDYLRQDIGEVIIDSEDIYNDALN
FIKQVMPNYQKKIKLYKDEIPLFTRFKIESQIATAYQREVKLPSGGSIFIDTTEALVSID
INSARATRGYDIEETALQTNLEAADEIGRQLRFRDIGGLLVIDFIDMSLTKNQREVENRL
RESLKLDRARLQLGRISRFGLLEMSRQRIRPSLRETSGIVCPRCNGQGTIRDVSSLSLSI
LRLIEEESMKNKSYKIRAVLPVEVATYLLNEKRNLIVNLELRQDVKIIIIPEPEMDTPHF
AVERLREDQLYGEKYSKNLEKNNYIENKFIIRTEKAAVVNKLPSVNSSNNFFSRIWNKIL
LFLLPKTKNNI
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaattcttattaatgctacccaaccagaagaattaagagttgcactggtagat
ggtcaatttttatatgatttagatattgaattttgtactaaagaacaaaaaaaatctaat
atatatcgtgctaaaattgttagaattgaaccaagtttagaagccgcttttgttgatttt
ggagcagaaagacatggttttttaccgctaaaagaaattgctaatgaatatttattaaat
aattgtaattgtaattataatattagaaatttacttaaagaaggtcaggaaataatagta
caagttgataaagaagaacgtagtaataaaggtgctgcattaactacttatattagttta
gcaggtaggtttttagttttaatgcctaataatcataggtcggttggtatttctagacgt
attacaggttatgacagatttagattaaaagaagctataaataaattatttatacctaat
aacatgggtataatagtgcgaactgcgggaatagctcgctcaagtaaagatttacaatgt
gatttaaattatttaattcaaatttgggaagccattacagaagaagcaaataaacgatat
gctccatttttaatatatagagaatctaatgttattattcgtggaatgcgtgattattta
agacaagatataggtgaggtaataatagatagtgaagatatttataatgatgcacttaat
tttattaaacaggttatgcctaattatcaaaaaaaaattaaactttataaagatgaaata
ccactttttactagatttaaaattgaatctcaaattgcaactgcttatcaaagagaagtt
aaattaccatccggtggttcaatttttattgatactacagaagctttggtatcaattgat
attaattcagcacgagcaactagaggatatgatatagaagaaacagctttgcaaacaaat
ttagaagcagctgatgaaatcggtagacaattgagattccgtgatattggtggtttatta
gtaattgattttattgatatgtctttaactaaaaatcaaagagaagtcgaaaatcgactt
cgtgaatctcttaaacttgatcgtgctcgtcttcaattaggtcgtatttcaagatttggt
ttattggaaatgtctcgacaacgaataaggccatctttacgtgaaactagtggtatagta
tgcccaagatgtaatggccaaggcacaatccgggatgtaagttctttatctctttctatt
ttacgtttaatagaagaagaatctatgaaaaataagagttataaaattagagctgtttta
ccagtcgaagtcgctacttatttattaaatgaaaaaagaaatcttatagttaatctagaa
ttaagacaagatgtaaaaattataattataccagaacctgagatggatactcctcatttt
gcagtcgaaagattacgtgaagatcaactttatggagaaaaatatagtaagaatttagaa
aaaaataattatatagaaaataaatttattatacgtacagaaaaagcagcagttgtaaat
aaacttccatctgtaaattcatctaataattttttttcacgtatctggaataaaatttta
ttatttttattacctaaaacaaagaataatatataa
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