Pseudomonas lijiangensis: KQP88_08505
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Entry
KQP88_08505 CDS
T08713
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
plij
Pseudomonas lijiangensis
Pathway
plij03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
plij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KQP88_08505 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plij03400
]
KQP88_08505 (ligD)
Enzymes [BR:
plij01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KQP88_08505 (ligD)
DNA repair and recombination proteins [BR:
plij03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KQP88_08505 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QWU84786
LinkDB
All DBs
Position
1951840..1954365
Genome browser
AA seq
841 aa
AA seq
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MAKSVSEYTRKRNFEITSEPAETSEKKGKAHTRALSFVIQKHDARNLHYDFRLELGGTLK
SWAVPKGPSLDPTQKRLAVHVEDHPLGYASFEGSIPKGQYGGGDVIVWDRGVWQPHGDPQ
EAYRQGKLKFTLIGEKLTGDWALVRTRLKGSGDKEQWLLIKEKDAVARPAAEYDIIREQP
QSVISGNQVGMTRTVKEKKTAKKPRPAKQDTFPEQLAPQLATLVEAPPEGDWLYEIKFDG
YRILARLHDGDVKLLSRNGNDWTDRMPQLASALKALKLKDSWLDGEVVVLDSQGLPDFQA
LQNAFETGRSQDILYYLFDAPFLKGQDMRERPVEERREALRQVLDKQKSTLLRYSDAFRV
GHRNIVESASAMGLEGVIGKRAGSPYVSKRNADWIKLKCRLRQEFVIVGYTAPQGSRSGF
GALLLAVNDEEAGLVYAGRVGTGFSAVLLKQLLKRLEPLQRDTSPLARPLNSAQKRNVQW
LEPQRVCEVEFAQWTREGILRQAAFVGLRSDKPASDIVREHPQQVTAPSAPKVSRNARGK
VNVAGIGVSHPERVIDRESQAQKIDLAHFYESIADWILPHLANRPVALLRCPEGVEGEQF
FQKHAERLVIPHIHKLDPALDPGHAPLMEIDTVQALIGATQMGAIEFHTLGATHDRIETP
DHLVLDLDPDPALPWRSMIEATQMLLAVLEELGLEAFLKTSGGKGMHIIVPLVRQADWDS
VKAFAKAIAEFVSRQLPERFTAVMGPKNRVGRIFVDYLRNTRGGSTVTAYSVRARPGLPV
SVPISRDELEGLQSARQWHIGNLEQRLRQLGSDPWAGYRNRQRLTQKMWKQLGAEPTRRT
P
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggccaagtccgtcagtgaatacacccgcaagcgcaactttgaaatcacttccgagcct
gctgaaacgtcggaaaagaaaggcaaggcgcatacccgtgcgttgagttttgtgattcag
aaacacgatgcgcgcaacctgcattacgactttcgcctggagctcggcggcactctcaaa
agctgggcggttcccaaggggccgagcctggacccgacgcagaaacgtctggcggttcat
gtggaagatcatcccctgggctacgccagcttcgagggcagtattcccaaggggcaatat
ggtggcggtgacgtgattgtctgggatcgtggcgtctggcaaccccatggcgatccgcaa
gaggcctatcggcaaggcaaactcaaattcaccctcatcggtgaaaagctgaccggcgac
tgggcactggtgcgtacgcgcctcaaaggcagcggcgacaaggagcaatggctgctgatc
aaggagaaagatgccgtcgcccggcctgctgccgagtacgacatcattcgcgaacagccg
caaagcgtaatcagcggcaatcaagtgggcatgacgcggaccgtcaaggagaaaaagacg
gcgaagaagccccggcccgcgaagcaggacacctttcccgaacagctggcgccgcaactg
gcgaccctggtagaggcgccgcctgaaggtgactggctctacgaaatcaagttcgatggc
tatcgaattcttgctcggctccacgacggcgatgtgaagctgctgagtcgtaacggcaat
gactggactgaccgcatgccgcaactggccagtgccctcaaggcgctgaagctcaaggac
agttggctcgatggcgaagtggtggtgctcgacagtcagggcctgccggactttcaggcg
ctgcagaatgccttcgagaccggacgcagccaggacatcctttattacctgttcgatgcg
ccctttctgaaggggcaggacatgcgcgaaagacctgtcgaagagcggcgtgaagcgctc
aggcaggtgctcgacaagcagaaaagtaccttgctgcgttactccgatgcctttcgggtg
gggcatcggaatatcgtcgaaagtgccagcgccatggggcttgagggcgtgatcggcaag
cgggccggcagcccttatgtcagcaagcgcaatgccgactggatcaagctcaaatgtcgg
ctgcgccaggagttcgtgattgtcggctatacagcgccccagggcagtcgcagtggtttt
ggtgccttgctgctggcggtcaatgacgaggaggcggggctggtgtatgccggtcgggtc
gggacgggcttcagtgcggtgctgctcaagcaactgctcaaacgcctggagcctttgcag
cgcgatacatcgcctctggccaggccactcaattcggctcagaagcgcaatgtgcaatgg
ctcgaaccgcaacgggtctgtgaggtggagttcgcccagtggacccgcgaaggcatcttg
cgtcaggcggcatttgtcggtttgcgcagcgataaaccggccagcgatatcgtacgcgag
catccgcaacaggtgactgcgcccagtgcacccaaggtttccagaaacgccagaggcaag
gtcaatgtggcaggtattggtgtcagccatcccgagcgggtcatcgaccgggaaagccag
gcgcaaaaaatcgacctggcacatttctacgagtccatcgccgactggattctgccgcat
ctggccaaccggccggttgccttgctgcgttgtcctgaaggtgtcgaaggcgagcagttc
tttcagaagcacgccgagcggctggtcatcccgcacattcataaactggacccggccctg
gatcccggccatgccccgctgatggagatcgataccgtgcaggcactgatcggtgccacc
cagatgggggccatcgaattccataccttgggcgcgacccatgaccggatcgaaaccccg
gatcatctggttctggacctcgaccccgatccggccttgccctggcgcagcatgatcgaa
gccacgcaaatgcttctggcagtgcttgaagaactgggacttgaggcttttctcaagacc
agtggcggcaaaggcatgcacatcatcgtgcctctggtgcggcaggcggactgggacagc
gtcaaggcgttcgccaaagccatcgccgaattcgtcagtcggcagttgccagagcgcttt
accgcagtgatgggaccgaaaaaccgtgtcggccggatcttcgtcgactatttgcgcaat
acacgtggcggcagtacggttaccgcttattccgtgcgcgccaggcccgggcttccggta
tcggtgcccatcagtcgtgatgaactggaagggctgcaatccgcccggcagtggcacatc
ggtaatcttgagcaacgtttgcgtcagctcggatccgacccctgggcggggtatcgaaac
aggcagcgccttacgcaaaagatgtggaagcaactgggtgccgaaccaaccaggagaacg
ccatga
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