KEGG   Pseudomonas lijiangensis: KQP88_08505
Entry
KQP88_08505       CDS       T08713                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
plij  Pseudomonas lijiangensis
Pathway
plij03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:plij00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    KQP88_08505 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:plij03400]
    KQP88_08505 (ligD)
Enzymes [BR:plij01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KQP88_08505 (ligD)
DNA repair and recombination proteins [BR:plij03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     KQP88_08505 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QWU84786
LinkDB
Position
1951840..1954365
AA seq 841 aa
MAKSVSEYTRKRNFEITSEPAETSEKKGKAHTRALSFVIQKHDARNLHYDFRLELGGTLK
SWAVPKGPSLDPTQKRLAVHVEDHPLGYASFEGSIPKGQYGGGDVIVWDRGVWQPHGDPQ
EAYRQGKLKFTLIGEKLTGDWALVRTRLKGSGDKEQWLLIKEKDAVARPAAEYDIIREQP
QSVISGNQVGMTRTVKEKKTAKKPRPAKQDTFPEQLAPQLATLVEAPPEGDWLYEIKFDG
YRILARLHDGDVKLLSRNGNDWTDRMPQLASALKALKLKDSWLDGEVVVLDSQGLPDFQA
LQNAFETGRSQDILYYLFDAPFLKGQDMRERPVEERREALRQVLDKQKSTLLRYSDAFRV
GHRNIVESASAMGLEGVIGKRAGSPYVSKRNADWIKLKCRLRQEFVIVGYTAPQGSRSGF
GALLLAVNDEEAGLVYAGRVGTGFSAVLLKQLLKRLEPLQRDTSPLARPLNSAQKRNVQW
LEPQRVCEVEFAQWTREGILRQAAFVGLRSDKPASDIVREHPQQVTAPSAPKVSRNARGK
VNVAGIGVSHPERVIDRESQAQKIDLAHFYESIADWILPHLANRPVALLRCPEGVEGEQF
FQKHAERLVIPHIHKLDPALDPGHAPLMEIDTVQALIGATQMGAIEFHTLGATHDRIETP
DHLVLDLDPDPALPWRSMIEATQMLLAVLEELGLEAFLKTSGGKGMHIIVPLVRQADWDS
VKAFAKAIAEFVSRQLPERFTAVMGPKNRVGRIFVDYLRNTRGGSTVTAYSVRARPGLPV
SVPISRDELEGLQSARQWHIGNLEQRLRQLGSDPWAGYRNRQRLTQKMWKQLGAEPTRRT
P
NT seq 2526 nt   +upstreamnt  +downstreamnt
atggccaagtccgtcagtgaatacacccgcaagcgcaactttgaaatcacttccgagcct
gctgaaacgtcggaaaagaaaggcaaggcgcatacccgtgcgttgagttttgtgattcag
aaacacgatgcgcgcaacctgcattacgactttcgcctggagctcggcggcactctcaaa
agctgggcggttcccaaggggccgagcctggacccgacgcagaaacgtctggcggttcat
gtggaagatcatcccctgggctacgccagcttcgagggcagtattcccaaggggcaatat
ggtggcggtgacgtgattgtctgggatcgtggcgtctggcaaccccatggcgatccgcaa
gaggcctatcggcaaggcaaactcaaattcaccctcatcggtgaaaagctgaccggcgac
tgggcactggtgcgtacgcgcctcaaaggcagcggcgacaaggagcaatggctgctgatc
aaggagaaagatgccgtcgcccggcctgctgccgagtacgacatcattcgcgaacagccg
caaagcgtaatcagcggcaatcaagtgggcatgacgcggaccgtcaaggagaaaaagacg
gcgaagaagccccggcccgcgaagcaggacacctttcccgaacagctggcgccgcaactg
gcgaccctggtagaggcgccgcctgaaggtgactggctctacgaaatcaagttcgatggc
tatcgaattcttgctcggctccacgacggcgatgtgaagctgctgagtcgtaacggcaat
gactggactgaccgcatgccgcaactggccagtgccctcaaggcgctgaagctcaaggac
agttggctcgatggcgaagtggtggtgctcgacagtcagggcctgccggactttcaggcg
ctgcagaatgccttcgagaccggacgcagccaggacatcctttattacctgttcgatgcg
ccctttctgaaggggcaggacatgcgcgaaagacctgtcgaagagcggcgtgaagcgctc
aggcaggtgctcgacaagcagaaaagtaccttgctgcgttactccgatgcctttcgggtg
gggcatcggaatatcgtcgaaagtgccagcgccatggggcttgagggcgtgatcggcaag
cgggccggcagcccttatgtcagcaagcgcaatgccgactggatcaagctcaaatgtcgg
ctgcgccaggagttcgtgattgtcggctatacagcgccccagggcagtcgcagtggtttt
ggtgccttgctgctggcggtcaatgacgaggaggcggggctggtgtatgccggtcgggtc
gggacgggcttcagtgcggtgctgctcaagcaactgctcaaacgcctggagcctttgcag
cgcgatacatcgcctctggccaggccactcaattcggctcagaagcgcaatgtgcaatgg
ctcgaaccgcaacgggtctgtgaggtggagttcgcccagtggacccgcgaaggcatcttg
cgtcaggcggcatttgtcggtttgcgcagcgataaaccggccagcgatatcgtacgcgag
catccgcaacaggtgactgcgcccagtgcacccaaggtttccagaaacgccagaggcaag
gtcaatgtggcaggtattggtgtcagccatcccgagcgggtcatcgaccgggaaagccag
gcgcaaaaaatcgacctggcacatttctacgagtccatcgccgactggattctgccgcat
ctggccaaccggccggttgccttgctgcgttgtcctgaaggtgtcgaaggcgagcagttc
tttcagaagcacgccgagcggctggtcatcccgcacattcataaactggacccggccctg
gatcccggccatgccccgctgatggagatcgataccgtgcaggcactgatcggtgccacc
cagatgggggccatcgaattccataccttgggcgcgacccatgaccggatcgaaaccccg
gatcatctggttctggacctcgaccccgatccggccttgccctggcgcagcatgatcgaa
gccacgcaaatgcttctggcagtgcttgaagaactgggacttgaggcttttctcaagacc
agtggcggcaaaggcatgcacatcatcgtgcctctggtgcggcaggcggactgggacagc
gtcaaggcgttcgccaaagccatcgccgaattcgtcagtcggcagttgccagagcgcttt
accgcagtgatgggaccgaaaaaccgtgtcggccggatcttcgtcgactatttgcgcaat
acacgtggcggcagtacggttaccgcttattccgtgcgcgccaggcccgggcttccggta
tcggtgcccatcagtcgtgatgaactggaagggctgcaatccgcccggcagtggcacatc
ggtaatcttgagcaacgtttgcgtcagctcggatccgacccctgggcggggtatcgaaac
aggcagcgccttacgcaaaagatgtggaagcaactgggtgccgaaccaaccaggagaacg
ccatga

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