Pseudomonas lijiangensis: KQP88_15125
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Entry
KQP88_15125 CDS
T08713
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
plij
Pseudomonas lijiangensis
Brite
KEGG Orthology (KO) [BR:
plij00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plij03032
]
KQP88_15125 (topA)
03400 DNA repair and recombination proteins [BR:
plij03400
]
KQP88_15125 (topA)
Enzymes [BR:
plij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KQP88_15125 (topA)
DNA replication proteins [BR:
plij03032
]
Prokaryotic type
DNA Topoisomerases
KQP88_15125 (topA)
DNA repair and recombination proteins [BR:
plij03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KQP88_15125 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
DUF2399
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QWU81392
LinkDB
All DBs
Position
complement(3698503..3701115)
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAAKEPAAKRGKATASE
APALSPKEKARRQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRKLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRFKRVVFNEITKKAIQEAFSKPGELDIARVNAQQARRFLDR
VVGYMVSPLLWQKVARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKGAN
VRFEVARENGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVSMARDYIETEFGKKYLPESPN
VYSSKEGAQEAHEAIRPSDVNTHPSKLSGMERDAERLYELIWRQFVACQMPPAQYLSTTV
SVAAGDFELRAKGRILKFDGYTRVLPQMSKPGDDGVLPDMAQGETLKLVTLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTGRLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFRKKLEVAEAPDSGMRANQPVMT
DIPCKVCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLTPGDEIAEDDEGESESRVL
RGKHRCPVCSTAMDAYLLDEKHKLHICGNNPDCSGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNAECKNTRKLLKSGEAAPPKMDPVKMPELKCDKVDDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVEGKPTGWRAFYDGGVWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggctaaggccaagaccatcaacaagtat
ttgggcaaccagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagtgctgccaaggaacctgccgccaagcgtggcaaggcaactgcgagcgaa
gcgcccgcactgagccccaaggaaaaggcccggcgccagttggtgtcgcgtatgggcgtc
gaccccgaacacggctggaaggccaaatacgaaatccttcccggcaaggaaaaggtgatc
gaagagctgcgcaagctggccaaggatgccgacaccatctatctcgcaacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccatcggtggggatgacagccgc
ttcaagcgcgtggtgttcaacgaaatcaccaagaaggccattcaggaagccttttcaaag
cccggcgagctggatatcgcccgtgtaaacgcccagcaggcccgtcgcttcctcgaccgc
gtcgtgggctacatggtgtcgccgctgctctggcaaaaggtcgctcgtggcctgtcagcc
ggtcgtgtgcaatcggttgccgtgaagctggtggtagagcgtgagcgcgaaatccgtgcc
ttcattcctgaagagtactgggaaatccacgccgacctgggcactgccaagggcgccaat
gtgcgctttgaagtcgccagggaaaatggcgaggccttcaagccgctcaacgaagcacag
gccatggcggcgctggagaagctcaaggcctccagctacagcatcgtcaagcgcgaagac
aagccgaccagcagcaagccgtcggcgccattcatcacgtccaccttgcagcaggccgcc
agtaaccgcctgggctttggtgtgaagaaaaccatgatgatggcccagcgcttgtatgaa
gcgggctacatcacttacatgcgtaccgactccaccaacctgtcggccgatgccgtcagc
atggcgcgtgattacattgagacagagttcggcaagaagtacctgccggaatcccctaat
gtctacagcagcaaggaaggcgcacaagaggctcacgaagcgattcgtccgtccgacgtg
aatacccatccaagcaagctgtcgggcatggagcgtgatgccgagcgcctttacgagttg
atctggcgccagttcgtggcttgccagatgccgccggcccagtacctgtcgaccacggtc
agcgttgctgccggtgacttcgaactgcgcgccaagggccgcatcctgaagttcgacggt
tacactcgcgtactgccgcagatgtccaagcctggcgatgacggtgtgctgccggacatg
gcgcagggcgaaaccctgaaactggtgacgctggacccgagccagcacttcaccaagccg
ccggctcgctactccgaagccagcctggtcaaggaaatggaaaagcgcggcatcggtcgt
ccttcgacctatgcggcgatcatttcgaccatccaggatcgtggctacgttgcattgcac
aatcgccgtttctattcggaaaaaatgggcgatatcgttaccggtcgtctgtccgagagc
ttttccaacctgatggactacggctttacggccggcatggaagagaacctcgacgatgtg
gcccagggcgagcgcgactggaaaaacgtgctggatgagttctacggcgacttccgcaag
aaactcgaagtggccgaagcccctgacagcggcatgcgtgccaaccagccggtcatgacc
gacattccgtgcaaggtgtgcggccgtccgatgcagatccgcactgcgtcgaccggtgtc
ttcctcggctgctcgggctacagcctgccacccaaggagcgttgcaaggcaacggtcaac
ctgactcccggtgacgagatcgccgaggatgacgagggtgaatccgaatcccgcgtattg
cgcggcaagcaccgttgtccggtctgcagcacggccatggatgcctatctgctggacgag
aagcacaagctgcatatctgcggcaacaatccggattgctcgggttacgagatcgaagag
ggcacctatcgcatcaagggctatgaaggtccgagcctggagtgcgacaagtgtggcagc
gaaatgcagctcaagaccggccgtttcggcaagttcttcggctgtaccaatgccgaatgc
aagaacacccgcaagctgctcaagagcggtgaggctgcgccaccgaagatggacccggtg
aagatgcctgagctcaagtgcgacaaggtcgatgacacctacatcctgcgcgacggtgct
tccggtctgttcctggctgcaagccagttcccgaagaaccgtgaaacccgtgcgccgctg
gtcattgagatcgtgccgcacaaggatgaaatcgatcccaagtatcacttcctctgcgaa
gcgccgaagaaagaccccgatggccgtccggcggtaattcgttacagccgcaagaccaaa
gagcaatatgttcagaccgaagtggagggcaagccgaccggctggcgtgccttctatgat
ggcggtgtctggaaggtcgaagacaagcgctga
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