Perognathus longimembris pacificus (Pacific pocket mouse): 125346409
Help
Entry
125346409 CDS
T08928
Symbol
Col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125346409 (Col13a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
plop00536
]
125346409 (Col13a1)
Glycosaminoglycan binding proteins [BR:
plop00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125346409 (Col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125346409
NCBI-ProteinID:
XP_048194876
LinkDB
All DBs
Position
2:44912260..45050147
Genome browser
AA seq
729 aa
AA seq
DB search
MVAERARGPGELGAPRAVAARTERCARLPSPGSCGLLALALCALALSLLAHFRTAELQAR
VLRLEAERGERQMEKAILGRVNQLLDEKWKLHSRRRREAPKMSPGCNCPPGPPGPTGRPG
LPGNKGSIGMPGHVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGK
PGHPGPKGEPGLAGPRGLPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQG
EQGQAGVQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGQKGDPGIQGYHGRKGERG
MPGMPGKHGAKGAPGIAVAGMKGEPGTPGAKGEKGASGHPGLSGLLGQKGEKGDAGNSIG
GSRGDPGPPGLPGPPGPKGEAGADGQAGPPGRQGDKGQPGAPGEHGPAGPKGSKGEPGKG
EMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGSPGQKGEIGLPGPPGHDGEKGP
RGKPGDLGPAGPQGPPGKDGPPGMKGETGHPGDPGEKGEKGEMGQTGSPGLDGPTGEKGE
PGDQGRPGATGLPGPIGLPGFTGEKGEAGEKGDPGTEVPGPPGPEGPPGPPGLQGVPGPK
GEAGLDGAKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSK
GDPGITGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDG
LPVQGCWNK
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggtagcggagcgcgcccgcggccccggggagctgggcgcgccccgggcggtggcggcg
cggaccgagcgctgcgcgcggctgcccagcccggggtcgtgcgggctcctggcgctggcc
ctgtgcgcgctggcgctcagcctgctcgcccactttcggacggcggagctgcaggcccgg
gtgctgcgcctggaagcggagcgcggggaacggcaaatggagaaggctattttgggacga
gtcaaccaactgctggacgagaaatggaagctccactcccgcaggcgccgggaagcccca
aagatgtctccaggatgtaactgcccgccaggacctcctggccccactggaagacccgga
ctcccagggaacaaaggctccattggaatgcctgggcatgtgggagtcaagggccaacca
ggcgagaagggtgcccctggtgatgccggcatgtccatcatcggtccccgaggcccccct
ggccagccgggtactcgaggcttccctggatttccgggtcctattggcctggatggcaaa
ccgggccaccccggaccaaaaggggaaccgggcctggcaggaccccgaggactgccgggc
cctcaaggacaaaaaggagaaaagggtcagtgtggcgagtatcctcatcggctgctgcct
cttctcaattcagtgcggctggctccacccccagtcattaaaaggaggaccttccagggt
gagcagggccaggctggtgtccaaggaccaccagggccaccaggcccccctggaccaagt
ggacctctggggcacccaggactgccagggcccatggggccacctggcttacctgggcct
cctggacagaagggagacccagggatccaaggctaccatggacgcaagggagaacggggc
atgccagggatgccaggcaaacatggagccaagggggcgcctgggattgccgtggctggg
atgaagggtgagccaggaaccccaggagcaaagggtgagaagggggcttctggccaccct
gggctgtctgggctcctgggacagaagggagagaaaggtgatgctggtaactccattgga
ggaagcagaggggaccctggccccccaggactccctgggcctccagggccaaagggagaa
gctggtgcagatggtcaggctgggcccccaggacgacaaggagacaaggggcagccagga
gcacctggagagcatggaccggctggccccaagggctccaagggagaacctgggaaagga
gagatggtggattacaatggaaacatcaacgaggctcttcaggagatccgaacactggcc
ttgatggggcctcctggccttcccggacaaataggcccacccggagctccagggagtcca
ggccagaagggggagattggactgccaggccctccgggacacgatggggaaaagggacct
cgaggcaagccaggagacctgggtcctgcaggtccccaaggacctccgggaaaggatggg
cctccaggaatgaagggagaaaccggacacccaggagaccctggagagaagggagagaaa
ggggagatgggacaaacaggctcaccgggtctagacggcccaactggggagaaaggagaa
ccaggtgaccaagggaggcccggagcgacaggattgcctggcccgattgggctcccagga
tttacaggagagaaaggagaagctggagagaagggcgatccaggaacagaggttcctggg
ccaccagggccagaggggcctcctggacctccgggcctccaaggtgttcctggaccaaag
ggggaagcaggcctagatggtgcaaaaggagagaagggtgtccagggagaaaaaggagac
cgagggcctctgggattaccgggagcttcaggtttggacggcaggcctgggccaccgggt
actccaggaccaatcggagttccaggcccagcaggaccaaagggcgagaggggcagcaaa
ggagatccagggataacaggaccaacgggagcagctgggcttcctggtttacatggacca
cccggggacaaaggaaaccggggggagagggggaagaaaggctctagagggccaaaaggg
gataagggagaccaaggagcacctggattagatgccccctgtccattgggcgaagatggc
ttaccagtccagggctgctggaacaagtga
DBGET
integrated database retrieval system
