Perognathus longimembris pacificus (Pacific pocket mouse): 125346617
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Entry
125346617 CDS
T08928
Symbol
Ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56 isoform X1
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plop03009
]
125346617 (Ddx56)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125346617 (Ddx56)
Ribosome biogenesis [BR:
plop03009
]
Eukaryotic type
Pre-60S particles
Helicases
125346617 (Ddx56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
125346617
NCBI-ProteinID:
XP_048195311
LinkDB
All DBs
Position
2:complement(64901844..64913824)
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AA seq
546 aa
AA seq
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MADPESLGFEHMGLDARLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA
YAIPMLQQLLHRKAIGPVVEQAVRGLVLVPTKELARQAQSMIQQLAAYCARDVRVANVSA
AEDSASQRAVLMEKPDVVVGTPSRILSHLQQDTLKLRDSLELLVVDEADLLFSFGFEEEL
KTILCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET
EEDKFLLLYALLKLSLIRGKSLLFVNSLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHI
ISQFNQGFYDCVIATDAEVLGAPAKDKRQGQRSKGDKASDPEAGVARGIDFHHVSAVLNF
DLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLVKIEELLSGEGEAPTLLPYQFRM
EEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPL
HPAVVKPHLGNVPEYLVPAPLRDLIQPRKRRKKLPSSRKAKKAKTQNPLRNFKHKEKKPR
PTAASS
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccagaatccctgggctttgagcacatgggcctggatgcccggcttttgcag
gcggtcacggacctgggatggtcgcgacccacactgatccaggaaaaggccatccctctg
gccctggaaggaaaggaccttctggcccgggcccgcacaggctccgggaagacagctgct
tacgcgattccgatgctgcagcagctgctccacaggaaggcgataggtcccgtcgtggaa
caggctgtgagaggcctcgttcttgttcctacaaaggagctggcacggcaagcccaatcc
atgattcagcagctagctgcctactgtgctcgggatgtgcgggtggccaatgtctcagct
gcagaagactcagcttctcagagagctgtgctaatggagaagccagatgttgtggtggga
accccatctcgcatattaagccatttgcagcaggacaccttaaaactgcgagactccttg
gagctgttggtagttgatgaggctgatcttcttttttcctttggctttgaggaagagctc
aagactattctctgtcacttaccccggatttaccaggctttcctcatgtcagctactttt
aatgaggatgtacaagcgctgaaggaactggttctacacaacccggttaccctcaagtta
caggagtcccagcttccagggccagaccagttacaacaatttcaagtggtctgcgaaact
gaagaagataaatttctgctgctctatgccctgctcaagctgtcgttgatacgaggaaaa
tccctgttatttgttaactctttggagcggggttataggcttcgcctattcttggaacag
tttagcatcccctcctgcgtgctcaatggagaactcccactgcgctccagatgccatatc
atctcacagttcaaccaaggcttctatgattgtgtcatagcaacagatgctgaagtcctg
ggggccccagccaaggacaagcgccagggccaacggtccaaaggagacaaggcttctgat
ccagaggcaggtgtggcacgaggcatagatttccaccatgtgtctgctgtgctcaacttt
gatcttcctcccacccctgaggcctatatccaccgagctggcagaacagcacgagctaac
aacccaggcatcgtgctgacctttgtgttacccacagagcagtcccacttagtcaagatt
gaggagctgcttagtggagagggtgaggcccccaccttgcttccctaccagttccggatg
gaggagattgagggcttccgctatcggtgcagggatgccatgcgctctgtgacaaaacag
gctatccgggaggcaagattgaaggagatcaaagaggagcttctgcactcagagaagctc
aagacttactttgaagacaaccccagggaccttcagctgctgcggcatgacctgcccttg
catcctgcagtggtgaagcctcacctgggcaatgtcccagagtacttggtccctgcccct
cttcgtgacctcatacaaccccgcaagaggcggaagaagctgccctccagtaggaaggct
aagaaggcaaagacccagaatccactgcgcaactttaagcacaaagaaaagaaacccaga
cccacagcggcatcctcctga
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