Perognathus longimembris pacificus (Pacific pocket mouse): 125368389
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Entry
125368389 CDS
T08928
Symbol
Ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03022
Basal transcription factors
plop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125368389 (Ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
125368389 (Ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125368389 (Ercc2)
03400 DNA repair and recombination proteins [BR:
plop03400
]
125368389 (Ercc2)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125368389 (Ercc2)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125368389 (Ercc2)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125368389 (Ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
AAA_22
SesA
Motif
Other DBs
NCBI-GeneID:
125368389
NCBI-ProteinID:
XP_048225296
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All DBs
Position
20:complement(20689075..20702652)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ
RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE
VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDTHGRQVPLPAGIYNLDDL
KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID
NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE
TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLGS
LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP
FDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT
FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT
SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYF
LRQMAQPFHREDQLGLSLLSLEQLQSEETLRRVEQIAQQL
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaatgtggacgggctgctggtctacttcccgtacgactacatctacccggag
cagttctcctacatgctggagctcaaacgcacgctggatgccaagggtcatggagtcttg
gagatgccttcaggtactgggaagacagtgtcccttctggctctgattatggcctaccag
cgggcgtacccactggaggtcaccaaactcatctattgctcgagaacagtgcccgagatt
gagaaggtgattgaggagctgcgcaagttgcttaatttctatgagaagcaggagggtgag
aagctgccatttttgggtctggctctgagctctcgcaagaacctgtgtattcaccccgag
gtgacgcccctgcgcttcgggaaggatgtggatgggaagtgccacagcttgactgcctcc
tacgtgcgggcccagtaccagcaggatgccagcctgccccactgccgcttctacgaggag
tttgacacccatgggcgccaggtgcccctccctgctggaatctacaacctggacgatctg
aaggctctggggcagcgtcagggctggtgcccatacttcctcgcccgctactcaatcctg
cacgccaatgtggtggtttacagctaccactaccttctggatcccaagattgctgacctg
gtgtccaaggagctagcccgcaaggccgtggtggtgtttgacgaggcccacaatattgac
aatgtgtgcatcgattccatgagcgtcaacctcacccgacgcaccctggaccgctgtcag
agcaacctggacaccctgcagaagacagtactcaggatcaaggagacagatgagcagcgc
ctgcgagaggagtacaggcgcctggtggaggggctgcgggaggccagcgctgcccgggag
acggacgcccacctggccaaccccgtgctgcccgacgaggtgctgcaggaggctgttcca
ggctctatccgcacagcagagcacttcctgggcttcctgcggcgcctgctggagtatgtg
aagtggcggctgcgcgtgcagcacgtggtgcaggagagcccgccggccttcctgggcagc
ctggcccagcgggtgtgcatccagcgcaagcccctcagattctgtgcggagcgcctccgc
tccctcctgcacaccttggagatcgccgatctggccgacttctccccgctcaccctgctc
gccaacttcgccaccctggtcagcacctacgccaagggcttcaccatcatcatcgagccc
tttgatgacaggaccccaaccatcgccaaccctgtcctgcacttcagctgcatggacgcc
tccctggccatcaaacccgtgtttgagcgcttccagtctgtcatcatcacatctgggacc
ctgtccccgctggacatctaccccaagatcctggacttccaccccgtcaccatggcaacc
ttcaccatgacgctggcccgggtctgcctctgccccatgatcatcggccgtgggaacgac
caggtggccatcagctccaaattcgagacccgggaagacattgcggtgatccggaactac
ggcaacctgctgctggagatgtccgccgtggtcccggatggcatcgtggccttcttcacc
agctaccagtacatggaaagcactgtggcctcctggtatgagcagggcatcctcgagaac
atccagaggaacaagctgctcttcatcgagacccaggatggggctgagaccagtgtggcc
ctggagaagtaccaggaggcctgtgagaatggccgtggagccatcctgctctctgtggca
cggggcaaggtgtccgaggggatcgactttgttcaccattacgggcgtgctgtcatcatg
ttcggggtcccctacgtctacacacagagccgcatcctcaaggcccggctggagtatctg
cgggaccagttccagatccgagagaatgacttcctcaccttcgacgccatgcgccatgcg
gcacagtgcgtgggtcgtgccatcaggggcaagactgactacggcctcatggtcttcgct
gacaagcgctttgcccgggccgacaagcgggggaagctgccccgctggatccaggagcat
ctcaccgacgccaacctcaacctcactgtggacgagggcgtccaggttgccaagtacttc
ctgcggcagatggcgcagcccttccatcgggaggaccagctgggcctgtccctgctcagc
ctggagcagctgcagtcagaggagacgctgcggcgagtggagcagatcgcccagcagctg
tga
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