Paenibacillus lycopersici: GXP70_02305
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Entry
GXP70_02305 CDS
T07013
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
plyc
Paenibacillus lycopersici
Pathway
plyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GXP70_02305 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plyc03019
]
GXP70_02305 (rnr)
03016 Transfer RNA biogenesis [BR:
plyc03016
]
GXP70_02305 (rnr)
Enzymes [BR:
plyc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GXP70_02305 (rnr)
Messenger RNA biogenesis [BR:
plyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GXP70_02305 (rnr)
Transfer RNA biogenesis [BR:
plyc03016
]
Prokaryotic type
tRNA degradation factors
GXP70_02305 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNA_pol_Rbc25
Motif
Other DBs
NCBI-ProteinID:
QHT58920
UniProt:
A0A6C0FXJ4
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All DBs
Position
505416..508571
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AA seq
1051 aa
AA seq
DB search
MITEQQLLDYMREQTYKPLTYQELDKQLGGAGNAESFRTFLVLLNELENEGKIVRNASDR
YGVPERMHLVRGRIQAHAKGFAFLIPEDKGHGDVYIGAHDLKSAMNGDIVLVRVTSRSAA
GGRMEGEVVRVVERAVTQIVGTFQNHEAYGFVLPDDKRLNRDIFIPQGKFLGAVTGQKVV
ARIVSYPEGRSAAEGEVIEVLGHKDDPGIDILSIIRKHQLPEGFPDDVMAEAEAAPDAIT
EDEIVRQGRRDLRDKVIVTIDGEDAKDLDDAVNIERLENGNYVLGVHIADVSYYVRENSA
LDQEAYRRGCSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTMSCEMEFDATTLKRVRHDV
FTSVIRTTERMTYANVRKILQGEDEEVAERYADLVDTFKLMEELAMRLRGMRMKRGAIDF
DFVESKVIVDESGKAVDIVKRERSIAESIIEEFMLAANETVAEHFYWLKVPFLYRTHDNP
DQEKLLHFVQFAANFGYAIKGKGGSVIHPRALQTLLEDVHGSKEQTVISTVLLRSMKQAK
YDAESLGHFGLAAEFYTHFTSPIRRYPDLVIHRVMREVFENGGTLPDARIEALAAKMPDI
AQQSSERERVAVDAERDTEKLKKCEYMLDKIGEEFEGIVSSVTSFGIFVELPNTVEGLIR
LGELTDDYYHFHEQHMLLIGERTSKTFRIGDEVRIRVERVNMDEHTIDFAMLENLEQGAD
SGDVARELGFGGRERGSARGGRGGRGGAGREAGSAQRSAGREPRSGGARGEGRGGRGEAG
RDGGSAQRSGRGGADGAAAHAGTGPRGRGPARGEAGAGGAAERRGRRRGSREELGGGQPA
RADVGAGAAPRGRGEQRAWKPEDDYNLDRILGVNDGAGDGTANGGGSEGSRGERRKAVRT
DMWGLPVRNAGSLKDYGEDPDDANRSRGRRGDGGSGRGRSGGDRSGFGGGAGRSSGGGGR
RSNRQGSQRDLSAAAAGGSNAGAGGDQSSGTGSRRKKPRSGGGGSAGGQLQAAPNASGGE
TAGTAGGARKRKKKSGDGGNATAAFVRKKRK
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgataactgagcagcagctccttgattatatgcgcgagcagacgtataagccgttgact
taccaagagctggacaagcagttaggcggagcgggcaacgcggaatcgttccggacgttc
ctggtgttgctgaacgagctggagaacgaggggaaaatcgtgcgcaatgcgagcgaccgt
tacggtgtccccgaacggatgcatttggtgcgcgggcggattcaggcgcatgcgaaaggg
ttcgctttcctgatcccggaagacaaggggcatggggacgtctacatcggcgcccatgat
ttgaagagcgcgatgaacggcgatatcgtgcttgtgcgggtcacgtcgcggagcgcggcg
gggggccgcatggaaggcgaggtcgtgcgcgtcgtggagcgcgcggtcacgcaaatcgtc
ggcacgttccagaatcacgaggcctacggcttcgtgctgccggacgacaaacggctgaac
cgcgatattttcatcccgcaggggaaatttcttggcgcggtcacggggcagaaggtcgtg
gcgcgcatcgtttcgtatcccgagggccggtcggccgcggaaggcgaagttatcgaggtg
ctcggccataaggacgatcccggcatcgatatcttgtccatcattcgcaagcatcagctt
cccgagggcttcccggacgatgtcatggcggaagcggaagcggcgccggacgcgattacc
gaggacgagatcgtacgccaaggccgccgcgacctgcgcgataaagtcatcgtgacgatc
gacggcgaggatgccaaggatctcgacgacgcggtcaacatcgaacggctggagaacggc
aactacgtgctcggcgttcatatcgcggacgtcagctactacgtgcgggagaattccgcg
ctggatcaagaagcgtaccgccgcggctgcagcgtctacctcgtggaccgggtcatcccg
atgctgccgcaccggctgtcgaacggcatctgctcgctcaatccgaaggtggaccgcctg
acgatgtcgtgcgagatggaattcgacgcgacgacgctgaagcgggtgcgccacgatgta
ttcacgagcgtcattcggacgacggagcggatgacgtacgcgaacgtgcggaagatcctg
cagggcgaagacgaagaggtggccgagcgttatgccgacctggtggatacgttcaagctg
atggaggagctcgcgatgcggctgcgcggcatgcgcatgaagcgcggcgcgatcgatttc
gacttcgtcgaatcgaaggtcatcgtcgacgagtcgggcaaagcggtcgatatcgtgaaa
cgcgagcgttccatcgcggagtcgatcatcgaggaattcatgcttgcggcgaacgagacg
gtcgcggagcatttctattggctgaaggtgccgttcctctaccggacgcacgacaatccc
gaccaggagaagctgctgcacttcgtgcagttcgcggcgaacttcgggtatgcgatcaaa
ggcaagggcggcagcgtcattcatccgcgcgcgctgcagacgctgctggaggacgttcac
ggctccaaggagcagacggtcatctccaccgtcctgctgcgttcgatgaagcaggccaaa
tacgacgcggagagcctgggtcacttcggccttgccgcggagttctacacgcacttcacc
tcgccgatccggcggtatcccgatctggtcatccaccgcgtcatgcgcgaggtgttcgag
aacggcggcacgctgccggatgcgcggatcgaggcgcttgccgcgaagatgccggacatc
gcgcagcaatcgtctgagcgggagcgggtcgccgtcgatgcggagcgggacacggagaag
ctcaagaaatgcgaatacatgctggacaaaatcggcgaggaattcgaaggcatcgtgagc
agcgtgacgagcttcggcatcttcgtggagctgccgaacacggtcgaagggcttatccga
ctgggcgagctgacggacgattactaccacttccacgagcagcatatgctgctcatcggc
gagcggacgtcgaagacgttccgcatcggcgacgaggtgcgtattcgcgtggaacgcgtc
aatatggatgagcatacaatcgatttcgcgatgctcgagaatttggagcagggcgcggac
agcggcgacgtggcgcgcgagctcgggttcggcggccgcgagcgcgggtctgcgcgcggc
ggacgaggcggccgtggcggagcaggccgcgaagcgggctccgcgcagcggagcgcgggg
cgcgagccgcgcagcggcggcgcgcgcggcgagggccgaggcggccggggcgaagccggc
cgcgatggcggctccgcgcagcggagcgggcgcggcggcgccgatggcgcggcggcgcat
gcgggcaccggcccgcggggccgtgggccggcgcgcggcgaagccggcgctggcggcgct
gcggagcggcgcggccgcaggcgcggcagccgcgaggagcttggcggcggccagccggcc
cgtgcggacgttggcgccggtgcggcgccgcgcggcaggggcgagcagcgggcgtggaag
ccggaggacgattataatctggatcgtatcctcggcgtcaatgacggcgccggcgacggt
acggcgaacggcggcggttccgaaggcagccgcggcgaacggcgcaaagcggtccgcacc
gacatgtggggcctgcctgttcgcaacgcgggctcgttgaaagactacggcgaagatccg
gacgacgcgaaccgctcgcggggcagacgcggcgacggcggctccggccgcggtcgttca
ggcggcgaccgcagcggcttcggcggcggcgcgggccggtcatccggcggcggcggtcga
cgaagcaaccgccaaggcagccagcgcgacttgagcgcggcggcggccggcggcagcaat
gccggtgccggcggcgatcagagcagcggcaccggctcccgccgcaagaagccccgcagc
ggtggtggcggctcggctggcggtcagctgcaagcggcgccgaatgctagcggcggcgaa
accgccggtacagccggcggcgcgcggaaacgcaagaagaaatccggcgacggcggtaat
gcgacggcggctttcgtccggaagaaacgcaagtag
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