Papilio machaon (common yellow swallowtail): 106712876
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Entry
106712876 CDS
T05138
Name
(RefSeq) LOW QUALITY PROTEIN: fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
pmac
Papilio machaon (common yellow swallowtail)
Pathway
pmac04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pmac00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106712876
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmac00536
]
106712876
Glycosaminoglycan binding proteins [BR:
pmac00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106712876
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
106712876
NCBI-ProteinID:
XP_014361035
LinkDB
All DBs
Position
Unknown
AA seq
1498 aa
AA seq
DB search
MSWWVTAACVALLVLQVASKDLAEASRDDLDLPQAQESDLVNYDDYNPFGEDENAIIAER
DFTSQSTTSTPGPRRPPTLPVTRVPPPNRCVDSGRTYLEGETWKRDNCTLCQCHLARMNC
SVIPACLIPPATSRPIYNAGALPNPPVRGVQGPPGDDGPSGPPGAPGISGVPGAPGSPGP
AGPMPDVNAYLAQLAATAGGDKGPAFDPYQYMQAPVGAPGIRGIPGPQGPPGPQGFQGPR
GEPGEPGLPGPLGPPGERGPPGLPGKDGSPGEDGEPGPAGATGQTGPRGAPGVPGIQGLK
GHRGFDGKDGAKGEQGFPGEKGPTGLPGQMGPTGPMGPVGPRGERGREGPPGPPGMRGVD
GAPGSPGLVGNAGKPGSPGFPGAPGIKGEQGLVGPKGSQGLQGPHGEAGRPGQPGEIGAP
GLAGRDGTPGEKGVQGQTGPSGPQGFPGPRGTPGIAGDPGIPGTKGMPGQPGERGAKGEA
GIRGETGVQGPRGLPGSLGPEGKRGKRGLRGPAGSIGPQGDRGLPGMRGLPGSDGPIGQK
GQPGERGGVGLPGPKGSTGDAGRPGPQGLQGQRGLVGRPGMAGKSGPPGERGIPGADGRP
GEQGLQGLQGPPGLMGSPGERGLQGEPGKDGEPGQQGQQGPKGDAGRDGSPGIQGPQGAS
GPAGERGPQGPPGPTGFPGMPGAAGLPGSPGKEGEPGIAGPAGPPGSTGPRGERGFTGER
GLSGQPGTPGEKGETGAQGADGPPGPEGLKGSKGHPGQLGAMGLPGPRGMTGXPGEKGER
GAAGPQGNDGPPGRQGEQGPQGPVGPQGHPGEPAERGEPGTPGVPGEPGAPGSQGERGQP
GLQGSPGLPGPPGLTGMPGLKGDRGYMGAKGQQGSPGNPGIPGETGQRGLAGLPGAKGSR
GEQGLKGDIGRAGLPGRPGELGPQGPQGSPGQAGPPGIPGAKGAAGDPGRPGPLGPIGLT
GAPGPEGPKGERGSEGEIGPQGPVGPSGPAGERGPSGLPGMAGPPGPQGQRGPQGENGAP
GKPGSDGAPGPVGPTGSQGPPGPMGEPGPEGRPGKLGQPGIPGRPGDKGPTGQPGASGPA
GPPGMQGPPGQSGPPGQAGERGLRGEPGPPGVDGPQGPSGKQGPPGLDGSKGERGEAGSD
GAKGHAGLPGLPGMVGAPGRQGERGLPGPIGPPGKDGDVGPRGTPGRDGSPGPQGPMGLP
GGRGPPGESGRHGAPGPAGPPGPPGLPGEGLAYDAAAIAAMLQQGSIKGPDPLGDDPNNL
PPRFFKDGMSPAERKKIVMKAYEQLKVSLNKFLKPDGTKEAPAKTCGDIKYHYPEFESGQ
YWIDPNGGDMNDAILVHCDMSTGASCVFPKPMQSQDIVYKGKEHEAWLSEIEDGFTISYK
AEHSQLTYLQLMSSRAVQNVTLHCVNTIGYYDPATHNYRHGLKLLAYNDAEILPKANNRL
RYKALLDNCQYKKQEWAETVLQYETDKPGRLPLLDVAVRDVGRRNQKFRIELGLACFS
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtggtgggtgactgcggcgtgcgtggcactgctggtgctgcaggtagccagcaag
gatttggcggaggcctcgcgcgatgacctcgacctgccacaagcacaggagtctgacctc
gttaattacgatgactacaatcctttcggggaagatgagaatgctattatcgcagaacgt
gactttacatcacagtcaacaacgagtactcctggaccccgaagaccgccgactttacct
gtaaccagagttccgcctccgaaccgctgtgtggattctggcaggacgtacctggagggc
gagacatggaagcgagacaactgcacgctctgtcagtgccatctcgctcgcatgaactgc
tccgtcatacctgcctgtctgataccgcctgcaaccagtagaccgatatacaacgccggc
gccttaccgaatccaccagtgagaggtgtgcaaggaccgccgggtgatgacggtccctca
ggaccgcccggagcaccgggtatcagcggcgtgccgggtgcgccgggctcaccgggaccg
gcaggccctatgcctgatgtcaatgcttacctcgcacaactggcggctacggctggcggc
gataaaggacctgcctttgacccttaccagtacatgcaagcgccagtgggcgctcccggt
atacgaggaattccaggccctcaaggtcccccgggaccacaaggtttccaaggacctcgc
ggtgaacctggagagcctggtctaccgggaccactagggccacctggagaaagagggccg
ccaggtcttcctggcaaggacggatctccgggtgaagatggcgagcccggtccagcagga
gcaacaggacaaacgggaccaagaggagccccaggcgttccaggaatacagggtttgaaa
ggtcatcgtggatttgacggcaaagatggcgctaaaggcgagcaaggttttcctggagaa
aaggggcctaccggccttccggggcaaatggggcccacggggccaatgggtcctgtaggt
ccccgtggggagcgaggccgtgaaggccctccgggtccaccgggcatgcgaggtgttgac
ggagcgccgggctctccgggattagtgggtaacgctggtaaaccaggctcaccgggtttt
cccggagctccgggaataaagggggaacaaggactagttggacccaaaggaagtcaaggt
ctccaagggccccatggggaagctggacgtccgggtcagcctggggagataggagcacct
ggactagcgggacgagatggtacaccaggcgagaaaggagttcagggtcaaactggaccc
tcgggaccgcaaggttttcccggacctagaggaacacctggtatagctggcgatccaggg
atccctggtactaaaggaatgccgggacaacctggagagagaggtgctaaaggggaagct
ggtattagaggagaaacaggcgtccaaggtccgcgtggtttacctggatctttagggccg
gaaggaaaacgcggaaaaagaggtctacgcggcccggctggaagtattggacctcaagga
gaccgtggattaccaggaatgagaggtcttcctggttccgatgggcctattggacagaaa
ggccagccaggtgaaagaggaggcgtaggtttacctggaccaaaagggagcacgggtgac
gctggaagacctggacctcaaggtttgcaaggtcagagaggcctagttggaaggcctggt
atggctggaaaatccggcccgcctggagaaagaggaatccccggtgctgatggaaggccc
ggagaacaagggcttcaaggtttacaaggtcctcctggattgatgggcagtcccggggaa
agaggtttacaaggtgaacctggtaaagacggcgaaccgggacaacaaggtcagcaagga
ccgaaaggcgatgctggtcgagatggtagtccaggaattcaaggacctcaaggtgcgagt
ggaccagcaggggaaagaggacctcagggaccacctggcccaactggctttccgggaatg
ccaggagctgccggtttacctggatctccaggaaaagaaggcgagccaggaattgcgggg
ccggctggacccccggggtcgacaggtccgcgaggagaaagagggttcactggtgaacga
ggactctctggtcagcccggcacaccgggagaaaagggagagacaggagcacaaggagca
gacggaccaccgggaccagagggacttaagggcagtaagggtcatccaggtcagctcggc
gcaatgggactccccgggcctcgtggtatgactggttgacctggggagaagggcgagaga
ggtgccgctggaccccaagggaatgatgggccgccaggacggcagggagagcaaggccct
caaggccctgtcggtccacaaggacatccgggtgaaccagctgaaaggggagaacctggt
accccgggagtacctggagaacccggggcaccgggatctcagggtgaaaggggtcagccg
ggattacaaggatctccgggtctccctggaccacctggtttgacgggcatgccgggctta
aagggcgatagaggttacatgggagcaaaggggcaacaagggtcgcctggtaacccaggt
atccctggcgagaccggacaaagaggtctagctggtctgcccggagctaagggatcccga
ggggaacagggactcaagggagacattggtcgcgctggtctacctggaagaccaggtgaa
ttaggaccacagggtccccaaggaagtcctggccaagccggacctcctggtattccagga
gctaaaggtgctgctggagatcctggtagacctggcccgttaggacctatcggtttaact
ggtgcgccgggccctgaaggccctaagggtgagagaggaagtgaaggagagatcggaccg
caaggccccgttggaccgtctggaccagctggcgaaaggggaccgagtggtttgcctggc
atggcgggaccaccgggaccacaagggcaacgaggaccgcaaggtgaaaacggagcacca
ggcaaaccgggttcagacggagcaccgggaccagtgggaccgactggttcacagggtccc
ccaggaccaatgggagaaccaggaccagaaggaagaccgggtaaactcgggcagcctgga
atacccggaagaccaggagataaaggaccgacgggtcagccgggagcatcgggacctgca
gggccgcctggaatgcagggtccacctgggcaatcaggacctccaggacaggcaggcgag
cgaggtcttcgaggcgagccgggaccccccggagttgatggtcctcaaggtccgtccgga
aagcaagggccgccagggctggatgggtccaaaggagagcgcggggaggcaggatcagac
ggcgctaagggacacgcgggcttaccgggactacctggcatggtgggagcacctggcaga
cagggggagaggggcctacctggaccaattggtcctccagggaaagatggagatgtggga
ccaagaggaacacctggacgtgatggcagtccaggtcctcaagggccaatgggactgcct
ggaggacgagggcccccaggagaatcgggtaggcacggggcgccgggtccggctggtccc
cccgggcccccaggtttgcctggtgagggcctggcctacgacgctgctgctattgctgct
atgcttcaacaaggttcaatcaaaggtcccgatccattgggagatgatccaaataacttg
ccgccgcggttctttaaagacggtatgtcgcctgcggagcgcaaaaagatagtgatgaaa
gcttacgaacagctcaaagtgtctctcaacaaattcctcaaacctgacggcacaaaggaa
gcaccggcgaaaacttgtggagatattaaatatcactatccagaatttgagagtggccaa
tattggatcgatccgaatggcggtgacatgaacgacgccatattagtgcactgcgacatg
tctactggtgccagttgcgtgttcccgaagccgatgcaatcccaggacattgtttacaaa
ggcaaagaacacgaggcgtggctcagtgagatagaagatggatttacgatatcgtacaaa
gcggagcatagccaactgacataccttcagttgatgtcatcgcgcgctgttcagaacgtg
acactgcactgcgttaatacaatcggttactacgacccggcaacacataactatagacac
gggctcaagctccttgcctacaacgacgctgagatcctgcccaaagctaacaacaggctt
agatacaaagctttactggataactgtcagtacaagaaacaagaatgggcagaaactgtt
ctacagtacgaaacagataagcctgggcgtctgccactcctggatgtagccgtcagagat
gttggtagaagaaaccagaagttccgcattgaactgggtttggcttgcttcagttaa
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