Paenibacillus macerans: LMZ02_12745
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Entry
LMZ02_12745 CDS
T09394
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmae
Paenibacillus macerans
Pathway
pmae03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LMZ02_12745 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmae03400
]
LMZ02_12745 (ligD)
Enzymes [BR:
pmae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LMZ02_12745 (ligD)
DNA repair and recombination proteins [BR:
pmae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LMZ02_12745 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
UMV50158
LinkDB
All DBs
Position
complement(2919868..2920767)
Genome browser
AA seq
299 aa
AA seq
DB search
MPKSIKGTILVDGAEVPVSNPDKLLWPEAGISKRIYLEKLAELSPYLLKYCKNRLLTTIR
YPGGIHGKFFYQKNAPDPLPPFVRTALHENIRYVVMDSLPVLLWLGNLACIEFHPSLHYV
GESLPCEWMIDLDPSREEEPRIMEAAAIVGDVLASLGLASVPKTSGATGVQIIVPVEYGV
TFDELRSIGHFVARYVTEKHPGLFTIERLKKDRGDKIYFDYLQHYGGKTLAAPYTPRARA
AASVSTPLTWEEVRKDPKPSDFNLLNIGRRLKERRDLLAAVPPQSVKLILQHLRGPVKV
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaatcgatcaaaggcaccatcctcgtcgatggcgcggaagtgcccgtatccaat
cccgacaagctgctctggccggaagccggcatcagcaaacggatctatttggagaagctc
gccgagctgtcgccgtacctgctgaaatactgcaaaaaccgcctgctgacgacgatccgt
tatcccgggggcatccacggcaaatttttttaccagaaaaacgcgcccgacccgctcccg
ccgttcgtgcgcacggcgctgcacgagaacatccggtacgtcgttatggacagcctgccc
gtcctgctctggctgggcaatttggcctgcattgaatttcatccttcgctgcattacgtc
ggggaaagcttgccctgcgaatggatgatcgacctcgatccgtcccgggaggaagagccg
cggatcatggaggcggccgccatcgtcggcgatgttttggcttcattgggacttgcctcc
gtgcccaaaacgtcgggggccaccggcgtgcagatcatcgtccccgtcgaatacggagtt
accttcgatgaattgcgctccatcggccactttgtggcccgctacgtcaccgaaaaacat
ccgggcctgttcaccatcgaacggttgaaaaaggaccggggcgacaaaatctatttcgac
tatctgcagcattacggcggcaaaacgctggccgcgccatacacgccgagagcccgcgcc
gcagccagcgtctcgacgcctttgacttgggaggaggtgcgcaaggatcccaaaccgtcc
gacttcaacctgctgaacatcggccggcgcctgaaggaacgcagggatttgctggcggcc
gttccgccccagtccgtcaagctgattctgcagcatttgcgcggccccgtgaaggtgtaa
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