Paenibacillus marchantiae: PTQ21_11665
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Entry
PTQ21_11665 CDS
T08974
Name
(GenBank) RNA ligase family protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmah
Paenibacillus marchantiae
Pathway
pmah03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PTQ21_11665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmah03400
]
PTQ21_11665
Enzymes [BR:
pmah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PTQ21_11665
DNA repair and recombination proteins [BR:
pmah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PTQ21_11665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WDQ34860
LinkDB
All DBs
Position
complement(2586037..2587002)
Genome browser
AA seq
321 aa
AA seq
DB search
MFNPLVPFEPISRDVIPSGQNWIAQIKWDGVRMLAYEDGQGIQLINRRLHNRTAQYPELV
QPRNLCSVPSYILDGEIIALDPDTGKPSFYHVLRRDRMSRPDGIAQAVNQIPVTYMVFDI
LFCDGVWVTDQPLAKRQRLLHQVLNPAPHVQEVTNTSDPDALLTVMRQHQMEGIVCKDLS
STYGINGKDQRWQKVKIFHDLYAMIGGVTYRSGIVNAIAVGVYDGPNFVYIGHVGTGKLN
SDSWRKLTEEVQPLIRKDRPFHNIPERSAETTWVEPQIGVKVQFMELTHHLTLRHPSIQA
FASVKRDECEISQISHLIPER
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatcctctggttccttttgaacctatatcccgagatgtgatccctagcgggcaa
aactggattgcccaaatcaaatgggatggggtccgcatgcttgcttacgaggacggacag
ggaattcaattaattaatcgcagattgcacaaccgaactgcgcaatatcctgagctggtt
cagccacgcaatctgtgctccgtcccttcttatattttggatggagagattattgccctt
gacccggatacgggaaaaccgtccttctatcacgtgttgcggcgagatcgcatgagcaga
ccggacggcattgcccaagctgtaaaccagattccggtgacttatatggtatttgatatt
cttttctgcgatggggtatgggtcacagatcaaccacttgcaaaacgtcagcgtctgctg
catcaagttctgaatcctgctccccatgttcaggaggtgaccaacacgtcagatccggac
gccctgctcactgtgatgagacagcaccagatggagggaattgtatgtaaagacctttcc
agtacctatggaatcaacggtaaggatcaacgctggcagaaggtcaagattttccacgat
ctatatgcgatgattggcggggtcacctaccgcagtggtatcgtcaatgcaatcgcagtt
ggtgtatatgatgggccaaactttgtctatattggtcatgtcggcacgggtaaactgaac
tcggactcctggcgtaaactaaccgaagaagtacagcctctcatccgaaaggatagacca
ttccataacatacctgagagaagcgcggagacgacatgggttgaaccacagatcggagtc
aaagtgcaattcatggaactcacccaccatcttaccctacgtcacccaagcatccaggct
tttgcttcggtaaagcgagatgagtgtgagatcagccagatcagtcatcttatccctgaa
cgataa
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