Pseudomonas maumuensis: KSS90_17660
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Entry
KSS90_17660 CDS
T07719
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmam
Pseudomonas maumuensis
Brite
KEGG Orthology (KO) [BR:
pmam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmam03032
]
KSS90_17660 (topA)
03400 DNA repair and recombination proteins [BR:
pmam03400
]
KSS90_17660 (topA)
Enzymes [BR:
pmam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KSS90_17660 (topA)
DNA replication proteins [BR:
pmam03032
]
Prokaryotic type
DNA Topoisomerases
KSS90_17660 (topA)
DNA repair and recombination proteins [BR:
pmam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KSS90_17660 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QXH55160
LinkDB
All DBs
Position
complement(3957990..3960599)
Genome browser
AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAEA
PALSPKEKARRTLVARMGVDPEAGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR
EGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV
VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKNAKV
RFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVSKREDRPTSSKPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSTDAVEMARSYIEKEFGKQYLPAAPIV
YGSKEGAQEAHEAIRPSDVSTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVT
VVAGEFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMAQGEALKLIQLDPSQHFTKPP
ARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESF
ANLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFNKKLQTAESSEHGMRANQPTLTN
IPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVLR
GKHRCPICSTAMDAYLLDEKRKLHICGNNPDCVGYEIEEGNYRIKGYEGPSLECDKCGSE
MQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDTYVLRDGAS
GLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCEAPQKDPDGRPAVIRYSRKTKE
QYVQSEVDGKPTGWKAFYDGKAWKVEDKR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggccaaggccaagaccatcaacaagtac
ctgggcagccagtacgtggtgaagtcgagtatcggccacatccgtgaccttcccaccagc
ggttccgccagtgcgagcaaggaaccggcggccaagcgcggcaaggccgcggccgaggct
ccggccttgtcgccgaaggagaaggcgcgccgtactctggtcgcacgcatgggcgtcgac
cccgaggcgggctggaaggccaagtacgagatccttcccggcaaggagaaggtcatcgag
gaactgcgccgcctggccaaggatgccgacaccatctatctcgcaaccgacttggatcgc
gagggggaagccatcgcctggcacctgcgcgaagccatcggcggcgacgacagccgctac
aagcgcgtggtgttcaacgaaatcaccaagaaagccatccaggaagccttctcccagccg
ggcgagctcgatatcgatcgggtcaatgcccagcaggcgcggcgtttccttgaccgcgtg
gtcggctacatggtctcgccgctgctgtgggcgaagatcgcccgtggcctgtccgccggc
cgcgtacagtcggtggcggtgaagctggtggtcgagcgtgagcgcgaaatccgcgcgttc
aacccggaagagtactgggaggtccatgccgacctgggcaccgccaagaacgccaaggtg
cgtttcgaggtagcccgtgagaagggcgaggccttcaagccgctcaacgaagcccaggcc
atggccgcactggagaagctcaaggcctccagctacagcgtgagcaagcgcgaggaccgg
ccgaccagcagcaagccttcggcgccgttcattacctccaccctgcagcaggccgcaagc
aatcgcctgggctttggggtgaagaagaccatgatgatggcccagcgtctgtacgaagcc
ggctacatcacttacatgcgtaccgactcgaccaacctgtcgaccgacgccgtcgagatg
gcccgcagctacatcgagaaggagttcggcaagcagtatctgcctgccgcgcccatcgtc
tatggcagcaaggaaggggcccaggaggcgcacgaggcgatccgcccgtccgacgtcagc
acccaccccaccaagctcagtggcatggagcgtgacgccgagcgcctgtacgaactgatc
tggcgccagttcctggcttgccagatgccgccggcgcagtacctgtccaccagcgtcacc
gtggtggcgggcgagttcgagctgcgcgccaagggtcgcatcctcaagttcgatggttac
acccgtgtcctgccgcagcagagcaagccgggcgaagacgacgtgctgccggaaatggcc
cagggcgaggcgctgaaactgatccagctcgatcccagccagcactttaccaagccgccg
gcgcgcttcaccgaagccagcctggtcaaggaaatggaaaaacgtggcattggccgccca
tccacctatgcggcgatcatttccaccatccaggatcgcggctacgtcacgctgcataac
cgccgcttctattccgagaagatgggcgacatcgtcaccgagcgcctgtccgagagcttc
gccaacctgatggactacggcttcaccgccggcatggaggagaacctcgacgacgtggcc
cagggcgagcgtgactggaagaacgtcctcgacgaattctatggcgacttcaacaagaag
ttgcagaccgccgagtccagcgagcacggcatgcgtgccaaccagccgaccctgaccaac
attccgtgcaaggaatgtggacggccgatgatgatccgtacagcctccaccggcgtgttc
ctcggctgctcgggttacagcctgccgccgaaggagcgttgcaaggcgacggtcaacctg
gtgccgggcgacgagattgccgccgatgacgagggtgaatccgagtccctggtgctgcgt
ggcaagcaccgctgcccgatctgctcgacggcaatggacgcctacctgctcgacgagaag
cgtaagctgcacatctgcggtaacaacccggactgcgttggttacgagatcgaagagggc
aactaccgcatcaagggctacgaaggtccgagcctggagtgcgacaagtgcggcagcgag
atgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaacccagcctgcaag
aacacccgtaagctgctcaagagcggcgaggcggcgccaccgaagatggacaaggtggat
atgccagagctcaagtgcgagaaggtcgacgacacctacgtgctgcgcgacggtgcctcg
ggtctgttcctggccgccagccagttcccgaaaaaccgcgaaacccgcgcgccgctggtg
ctggagatcgtcccgcacaagcacgagatcgatccgaagtatcacttcctctgcgaagct
ccgcagaaggatccagacgggcgcccggcggtgatccgctacagccgcaagaccaaggag
cagtatgtgcagtccgaggttgacggcaagccgactggttggaaggcgttctacgacggc
aaggcgtggaaggtcgaagacaagcgctga
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