Pseudomonas mandelii: OU5_2627
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Entry
OU5_2627 CDS
T03626
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pman
Pseudomonas mandelii
Pathway
pman03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pman00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU5_2627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pman03019
]
OU5_2627
03016 Transfer RNA biogenesis [BR:
pman03016
]
OU5_2627
Enzymes [BR:
pman01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
OU5_2627
Messenger RNA biogenesis [BR:
pman03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OU5_2627
Transfer RNA biogenesis [BR:
pman03016
]
Prokaryotic type
tRNA degradation factors
OU5_2627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_2
Motif
Other DBs
NCBI-ProteinID:
AHZ69706
UniProt:
A0A024EAS8
LinkDB
All DBs
Position
complement(2938750..2940855)
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AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA
TALLGAIRAEFGDAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQPSSSEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSIAAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgtatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgtg
ttggtgactgtggtcggcgccaagcaagccgatccaggcaagggcttcttccctctgtcc
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaagaaaaccgatccggacatcgctgcgatgatcggtacctcggctgcgttggctatc
tccggtattcctttcgatggcccgatcggcgctgcccgcgtggcgttccacgaaagcact
ggctacctgctgaacccgacttacgaacaacagaaagcttcgagcctggacatggtcgtt
gccggtacttcggaagccgtattgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgcggtactgtttgctcacgacgagttccaggtggtgatcaacgccgtc
aaggaactggccgccgaagctgccaagccgacctggacctgggctccacagccagaagcc
actgctctgctgggcgctatccgtgccgagttcggcgacgcgatctcccaggcttacacc
atcaccatcaaggccgaccgttacgctcgcctgggtgagctgaaagaccaggtggttgcc
aagctgtccggtgaagaaggccagccttcgtccagcgaagtcaaagccgctttcggcgaa
atcgaataccgcaccgttcgcgaaaacatcgtaaacggcaagccacgtatcgacggtcgc
gacaccaagaccgtacgtcctttgaacatcgaagtcggtgttctgccaaagactcacggt
tcggcgctgttcacccgtggcgaaacccaggcgctggttgttgcaacactgggcaccgcc
cgtgacgcacagctgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccgttctcggtaggtgagtgtggtcgcatgggtggcgctggccgtcgc
gaaatcggtcacggccgtctggcccgtcgttcgattgcagccatgctgcctgctgccgac
gtgttcccgtacaccattcgtgttgtgtcggaaatcaccgaatccaacggttcgagctcg
atggcttccgtttgcggcgcttccctggctctgatggacgccggcgttccgatgaaggca
ccggttgccggtatcgccatgggtctggttaaagaaggcgagaagttcgccgtcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaagtagccggtaccgcc
aaaggtgttaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagaaatcatg
gaaatcgctctgggccaagccctggaagcgcgcctgaacatcctcggtcagatgaaccag
atcattggtcagtcccgcaccgaactgtcggaaaatgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgaccattcgtgcgatc
tgtgaagagaccaaggcttcgatcgacattgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagcggctgaagcagcacgtcagcgcgttctgggcatcaccgcagaagct
gaaatcggcaagatctacgttggtaaggttgagcgcatcgtcgacttcggcgcattcgtc
aacatcctgcctggcaaggacggtctggtacacatctcgatgctgagcgacgctcgcgtt
gagaaagtgaccgacatcctgaaagaaggccaggaagtggaagtactggtactggacgtg
gacaaccgcggccgtatcaaactgtccatcaaagacgtagcagcggccaaggcttcgggc
gtttaa
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