Pseudomonas marincola: PMYSY11_2787
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Entry
PMYSY11_2787 CDS
T07318
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmao
Pseudomonas marincola
Pathway
pmao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PMYSY11_2787 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmao03400
]
PMYSY11_2787 (mfd)
Enzymes [BR:
pmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PMYSY11_2787 (mfd)
DNA repair and recombination proteins [BR:
pmao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PMYSY11_2787 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AroM
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAE6926518
LinkDB
All DBs
Position
PMYSY11:2895988..2899425
Genome browser
AA seq
1145 aa
AA seq
DB search
MSVLRLPSLPASAGKQHWGNLPGAALSLAIAEAASSAKRFTLLLTADSQSAERLEQELRF
FAPELPVLHFPDWETLPYDLFSPHQDIISQRISALYRLPELKHGVLVVPITTALHRLAPK
RFLLGSSLVLDAGQKLEVNEMRSRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSHQPY
RIDLFDDEIETLRTFDPETQRSIDKVESTKLLPAREFPLEKKAVTDFRGRFRERFDVDFR
RCPIYQDLSTGITPAGIEYYLPLFFEETATLFDYLPQDTQVFSLPGIEKAAEQFWTDARN
RYEERRVDPERPLLPPSDIFVPVEDCFARLKDWPRVVISKEDIEDGVGRQRFNAQPMPDL
AIQAKSSEPLAALRRFIENYPGRILFCAESAGRREVLLELLARLKLSPREFEGWPQFTQA
KDRLGITIAPLDEGLVLDEIALIAESPLFGQRVMQRRRREKTRDAGENVIKNLTELREGA
PVVHIDHGVGRYQGLITLEIDGQSAEFLSLQYAEEAKLYVPVASLHLIARYTGSDDALAP
LHRLGSEVWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFTDPMADYATFSSGFPFEE
TPDQQAAIDAVHDDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLL
AQQHYNSFRDRFADWPVKVEVMSRFKSAKEVGEAMQQLAEGKVDIVIGTHKLLQDDVKFN
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPA
RRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADIAALVPEARIGIG
HGQMRERELEQVMGDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRKQLTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGD
GQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLPDVH
ARLILYKRIANAANEDDLKELQVEMIDRFGLLPEPTKNLVRITLLKLQAETLGISKVDAG
PQGGRIDFTADTQVDPLTLIKLIQSQPNRYKFEGATQFKFQIPMERPEERFNTLEALFER
LMPKN
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgcctaccgtccctgcccgcctcggccggcaaacaacactgggggaac
ctgcccggtgccgccttgagcctggcgattgccgaagccgccagcagtgcaaagcgtttc
actttgttactgactgccgacagccaaagtgctgagcgcctggagcaagaactcagattc
ttcgcccctgagctgccggttttgcacttcccggactgggaaacgctgccgtatgacctg
ttttcccctcaccaagacatcatttcccagcgtatttccgcgctgtatcgcctgccagag
ctgaaacacggggttttggtagtcccgatcaccaccgccctacatcgcctggcacctaaa
cgtttcttgctgggcagcagcctggtgcttgatgccgggcaaaagctcgaagtcaacgag
atgcgcagccgcctcgaagccgctggatatcgctgcgtggacaccgtgtatgagcatggc
gaatttgccgtgcgcggagcgctgatcgacctgttcccgatgggcagccaccagccgtac
cgtattgatctgttcgatgacgaaatcgaaaccctgcgcaccttcgacccggagactcag
cgctcgatcgacaaggttgagtcgaccaagctgctgcctgcgcgcgaattcccgctcgag
aagaaagccgtgaccgatttccgcggacgctttcgcgagcgttttgacgttgatttcagg
cgttgcccgatctatcaggatctctcgaccggcattaccccggccggtatcgagtattac
ctgccgctgttcttcgaagagaccgcgaccctgttcgactacctgccgcaagacacgcag
gtgttctcgctacccggtatcgaaaaggccgccgaacagttctggaccgatgcgcgcaac
cgctacgaagagcgccgcgtagaccctgaacgcccattgctgccgccaagcgatattttc
gtgccggttgaagactgctttgcacgcctgaaagactggccgcgcgtggtcatcagcaag
gaagacatcgaagacggcgtcggccgccagcgcttcaatgcgcagccgatgccagatttg
gcgattcaagccaaatccagcgaaccactcgccgccctgcgccggtttatcgaaaactac
ccgggccgcattctgttctgcgccgaatccgccggtcgccgcgaagtactcctcgaactg
ttggcccggctcaaactcagcccgcgcgagttcgagggctggccgcagttcactcaagcc
aaagatcgccttggcatcaccatcgcaccgctcgacgaaggcctggtgctggatgaaatc
gccctgattgccgaaagcccgctgttcggccaacgcgtcatgcagcgtcgtcgtcgcgag
aaaacccgtgacgctggcgaaaacgtcatcaagaacctcaccgaactgcgcgaaggcgct
ccggtggtgcacatcgatcacggtgttggccgctatcaaggcctgatcaccctggaaatc
gacggccaaagcgctgagtttctgtcgttgcaatacgccgaagaagccaagttgtacgtg
ccggttgccagcttgcacctgattgcccgctacaccggcagcgatgacgcccttgcgccg
ctgcaccgccttggctctgaggtctggcagaaagccaagcgcaaagcggccgaacaggtg
cgcgatgtggcggctgaactgctggatatctatgcccgccgcgctgcccgtgaaggctac
gcctttacagacccgatggctgattacgccacattcagttcgggtttcccgttcgaagag
acgccggaccaacaagcagccatcgacgcggttcacgacgacatgctcgcgcccaagccg
atggatcgcctggtctgtggcgacgttggcttcggcaagaccgaagtcgccatgcgtgca
gcctttatcgctgtacatggcggtaaacaagtcgcgatcctggtgccgaccacgctgctc
gcccagcagcattacaacagcttccgcgaccgcttcgccgattggccggtaaaggtcgag
gtgatgagccgcttcaagagcgccaaggaagttggcgaggccatgcagcaattggctgaa
ggcaaggttgatatcgtcatcggcacgcacaagttgctgcaggatgacgtcaagttcaac
aacctggggctggtgatcatcgacgaagagcaccgtttcggtgtgcgccagaaagagcag
ctgaaagcgctgcgcagcgaagtcgacattctcaccctcaccgccacgccgattccgcgc
acactaaacatggccgttgccggcatgcgcgacctgtcgattatcgccacccctccagcg
cggcgcttgtcggtacgcacctttgtgatggagcagcaaaacactgtcatcaaagaggcg
ctactgcgtgaattgctccgtggcggtcaggtttactacctgcacaacgatgttaaaacc
atcgaaaaatgcgccgctgatatcgccgcactggtgcctgaagcccgtattggtatcggc
cacggacaaatgcgcgagcgcgaactggaacaggtgatgggcgatttctatcacaagcgc
ttcaacgtactgatcgcctcgaccattatcgaaaccggcatcgacgtaccaagtgccaac
accatcatcattgagcgcgccgacaagtttggcctcgcccagttgcatcagttgcgcggc
cgcgtcggtcgtagccaccaccaggcgtatgcgtacctgctgacaccgccacgcaagcaa
cttaccgacgacgcgcagaagcgcctcgaagccatcgccaacgcgcaagatctcggcgca
ggctttgtgctggccacccacgaccttgagattcgtggcgctggcgagctgcttggtgac
ggccagagcggtcaaatccaggccgttggcttcacgctgtatatggaaatgcttgagcgc
gcggtgaaatcgatccgcaaaggtgagcaacctaatctcgaccagccacttggtggcggc
cccgaggtcaacttgcgcgtaccggcgctgatcccggaagactacttgcccgacgtgcat
gcgcggctgattctgtacaagcgcattgccaacgccgccaacgaggatgatctcaaggaa
ctgcaggttgagatgatcgaccgcttcggcctgcttcccgagccgaccaagaatctggtg
cgcattaccctgctcaaattgcaggccgagacacttggcatcagcaaagtcgacgccggt
ccgcaaggcggtcgcatcgactttaccgccgacacccaggttgatccgctaaccttgatc
aagctgatccagagccaacccaatcgctataaattcgaaggcgcgacgcagttcaaattc
cagattccgatggaacgccccgaagaacgtttcaatacccttgaggcgctgtttgagcgc
ctgatgccgaaaaactaa
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