Pseudomonas mediterranea: E3Z27_09360
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Entry
E3Z27_09360 CDS
T08284
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmed
Pseudomonas mediterranea
Pathway
pmed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E3Z27_09360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmed03400
]
E3Z27_09360
Enzymes [BR:
pmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E3Z27_09360
DNA repair and recombination proteins [BR:
pmed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E3Z27_09360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
MFD_D3
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QHA81882
UniProt:
A0A6I6Q7R7
LinkDB
All DBs
Position
complement(2119234..2122686)
Genome browser
AA seq
1150 aa
AA seq
DB search
MPVLRLPLLPATAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELGF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
RFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVQSVRLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVEPGAGRERFPAKALPDL
AIEAKATQPLAALAGFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLVLDDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFP
FEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAILVPT
TLLAQQHYNSFFRDRFADWPVTVEVMSRFKSAKDVNAAVADLAEGKIDIVIGTHKLLQDD
VKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA
TPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEAR
IGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYL
PDVHARLILYKRIASASNEEDLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLQAEQLGIKK
VDGGPNGGRIEFAAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERPEERFNTVEA
LFERLTQTTA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtcttccgcttctccctgccacggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccattgccgaggccgccagcgctgccaagcgcttt
accctgctgctgaccgccgacagccagagcgccgagcggctggagcaggagctgggtttc
ttcgccccggatctgccggtcctgcattttccggactgggaaaccctgccctacgatctg
ttctcgccacaccaggacatcatttcccagcgaatcgccagcctctatcggttgccggag
ctcagtcatggcgttttggtagtgcccatcaccacggccctacatcgcctggccccgacc
cggttcctgctcggcagcagcctggtgctggatatcggccagaagctggatgtggagcag
atgcgcacccgactggaggccagcggctaccgttgcgtcgacaccgtgtacgaacacggc
gagttcgcggtacgtggcgccttgatcgacctgttcccgatgggcagcaagctgccttat
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcactttcgatccggaaaaccag
cgttccatcgacaaggtccagtcggtgcgcctgctgcccgccaaggaattcccgctgcag
aaagacgccgtgacccgtttcaaggcacggtttcgcgaacgcttcgacgtggatttccgt
cgctgcccgatcttccaggacctgagcagcgggatcacccccgccggcatcgagtattac
ctgccgctgttcttcgaagagacctccaccctgttcgattacctgccccaggacacccag
gtgttctcgttgcccggcatcgaacaggccgcggaaaacttctggaacgacgtgcgcaat
cgctacgaagagcgtcgcgtcgacccatcccgtcctttattgccgcccgccgagttgttc
ctgccggtggaagactgctttgcccgtctcaagaactggccacgcgtggtggcaagccag
caggacgtggagcccggcgccggccgtgaacgcttccccgccaaggccctgccggacctg
gcgatcgaagccaaggccacccagccattggcggcgctggccggttttctcgatgagttt
cccggtcgcgtgctgtttaccgctgaatccgccgggcggcgcgaagtgctgctggaattg
ctcgagcgcctgaaactgcggccgaaaacggtcgacagctggccggatttcgtcgcgagc
aaggatcgcctggcaatcaccatcgcaccactggacgaaggcctggtgctcgacgatccg
gcgctggcgctggtggccgaaagcccgttgttcggccagcgcgtcatgcaacgccgacgc
cgcgagaaacgcgccgatgccgccaacgacgccgtcatcaagaacctcaccgaactgcgc
gaaggcgcaccggtggtgcacatcgaccacggcgtgggccgctacctgggcctggcgact
ttggaaatcgacaaccaggctgccgaattcctcaccctggaatacgccgaaggcgccaag
ctctacgtgccggtggcgaacctgcacctgatcgcacgctacaccggcagtgacgacgcc
ctggccccgctgcatcgcctgggctcggaaacctggcaaaaggccaagcgcaaggccgcc
gagcaagtgcgcgacgtggccgccgaactgctggacatctacgcccgccgcgccgcgcgc
gagggttatgccttcgccgacccgaaagccgactacgaaaccttcagcgccggtttcccg
ttcgaggaaaccgtcgaccagcagaccaccatcgaagccgtgcgcgccgacatgctcgcg
cccaagccgatggaccggctggtgtgcggcgatgtcggcttcggcaagaccgaggtggcg
atgcgcgccgcgttcattgccgtacacagcggcaagcaggtcgccatcctggtgccgacc
accctgctcgcccaacagcactacaacagcttcttccgcgaccgcttcgccgattggccg
gtgaccgtggaggtgatgagccgcttcaaatccgccaaagacgtgaacgccgccgtggcc
gacctggccgagggcaagatcgacatcgtcatcggcacgcacaagctgctgcaggacgat
gtgaagatcaagaacctcgggctggtgatcatcgacgaagaacaccgcttcggtgtgcgc
cagaaagaacagctcaaggccctgcgcagcgaggtcgacatcctcaccctgaccgccacg
ccgattccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgcc
acgccgccggcccgtcgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacg
gtcaaggaagccctgctgcgcgagctgctgcgtggcggccaggtctattacctgcacaac
gacgtcaagaccatcgagaagtgcgccgccgacctggccgagctggtgccagaagcacgg
atcggcatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttc
taccacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggtatcgacgtg
ccaagcgccaacaccatcatcatcgagcgggccgacaagttcggcctggcccagttgcac
caactgcgcggccgcgtcgggcgtagtcaccaccaggcctacgcctacctgttgaccccg
ccacgccagcagatcacgccggatgcggaaaagcgcctggaggccatcgccaatacccag
gatctcggcgccggcttcgtgcttgccaccaacgacctggaaatccgtggcgccggcgaa
ctgctgggtgacggccagagcgggcagatccaggccgtcggcttcaccctgtacatggaa
atgctggaacgggcggtcaagtcgatccgcaagggcgaacagccgaacctcgaccaaccc
ctgggcggcgggccggaaatcaacctgcgggtgccggcgctgatcccggaggattacctg
ccggatgtccatgcacggctgatcctctacaagcgcattgcctcggccagcaacgaggag
gatctcaaggacctgcaagtggaaatgatcgaccgctttggcctgttgccggaaccgacc
aagaacctggtgcgaacgacgctgctcaaactccaggccgaacaactgggcatcaagaaa
gtcgacggtggccccaatggcggccggatcgaattcgcagcccagaccccggtcgatccg
ttggtgctgatcaagctgatccagggccagcccaagcgctacaagttcgaaggcgccacg
atgttcaagttcatggtgcccatggagcgcccggaagaacgtttcaataccgtagaagcg
ctgttcgagcgcctcacccagaccactgcttga
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