Paraburkholderia megapolitana: FNZ07_30300
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Entry
FNZ07_30300 CDS
T06515
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmeg
Paraburkholderia megapolitana
Pathway
pmeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNZ07_30300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmeg03019
]
FNZ07_30300
Enzymes [BR:
pmeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FNZ07_30300
Messenger RNA biogenesis [BR:
pmeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FNZ07_30300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDQ85309
LinkDB
All DBs
Position
2:3801277..3802845
Genome browser
AA seq
522 aa
AA seq
DB search
MSFDSLGLSEPLVRAVHELGYTSPTPIQLQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLTGMPPHASGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID
ALRRGVDIVVATPGRLLDHMQQKTIDLSHIEILVLDEADRMLDMGFIHDIKRVLAKLPPK
RQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAELVAQKIHPVDRDRKREMLTHLI
RQYNWFQVLVFTRTKHGANRLAEQLGKDGISALAIHGNKSQSARTRALAEFKDGTLQVLV
ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAISLVCVDELQLLKDI
EKLIKRAVPQEVIPGFEPDPTAKPEPILRRSQGAGGGGGRQPRQSQGAPKREGGSGSAKP
APRSGQRPAAGGAQQAKPKAQGGGAKPAHAAKAGTTQGQPRKDAPRSQDKPRAASHDTGG
AAQHAPRKPSNNAGALLSGNRPRGTGNTNPGGVPRNGGQRGR
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattccctcggtttgtccgaacccctcgtccgtgccgtgcacgaactgggc
tacacgtcccctacgccgatccagttgcaggcgatccccgcggtcctgaacggcggcgat
ctgctggccggcgcacagaccggcaccggcaagaccgccggcttcacgctgcccatcctg
caacgcctgaccggcatgccgccgcacgcatcgggcaagcgcgtcgtgcgcgccctgatc
ctcacgccgacgcgtgaactcgccgcccaggtcgaggaaagcgtgcgggcgtacggcaaa
tatctgaagctgaagtcgaccgtgatgttcggcggcgtcggcatcaatccgcagatcgat
gcgctgcgccgcggcgtcgacatcgtcgtcgcgacgcccgggcgtctgctcgatcacatg
cagcagaagaccatcgatctgtcgcatatcgagatcctcgtgctcgacgaagccgaccgc
atgctcgatatgggcttcatccacgacatcaagcgtgtactcgcgaagctgccgccgaag
cggcagaacctgctgttctccgcaacgttctccgatgaaatcaagacgctcgccgacaac
ctgctcgattcgccggcgctgatcgaagtcgcgcgtcgcaataccacagccgaactcgtc
gcgcagaagattcacccggtcgatcgcgatcgtaagcgcgagatgctcacgcatctgatc
cgtcagtacaactggttccaggtgctcgtgttcacgcgtaccaagcacggtgcgaaccgt
cttgccgaacagctcggtaaggacggcatcagcgcgctcgcaattcacggcaacaagagt
cagtccgcacgcacacgggcgctcgccgagttcaaggacggcacgctgcaggtgctggtg
gccaccgacatcgctgcacgcggtatcgatatcgaccagttgccgcacgtggtcaacttc
gacctgccgaacgtgcccgaagactacgtgcaccgtattggtcgtaccggccgtgcgggt
gcgacgggcgaagcgatctcgctcgtgtgcgtcgacgagttgcaactgctgaaggacatc
gagaagctgatcaagcgtgcggtgccgcaggaagtgattccgggcttcgaaccggatccg
accgcgaagcccgaaccgatcctgcgtcgcagccagggtgctggcggcggaggtggacgt
cagccgcgtcagagccagggtgcgccgaagcgtgaaggtggatcgggatcggccaagcca
gcgccgcgttcaggtcaacggccggctgccggtggcgcgcagcaagccaagccaaaggcg
caaggcggtggtgcgaagcctgctcatgctgcgaaggcagggacgacgcaaggccagcct
cgcaaggatgcaccgcgtagtcaggacaagccgcgcgcggcctcgcacgacacaggcggt
gctgcacagcatgcgccgcggaaaccgtcgaacaatgcaggcgcgctgctcagtggtaat
cgtccgcgtggtactggcaacaccaacccgggtggcgtgccgcgcaacggcgggcaacgc
ggccggtaa
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