Paraglaciecola mesophila: FX988_01733
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Entry
FX988_01733 CDS
T06389
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pmes
Paraglaciecola mesophila
Pathway
pmes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FX988_01733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmes03019
]
FX988_01733
03016 Transfer RNA biogenesis [BR:
pmes03016
]
FX988_01733
Enzymes [BR:
pmes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FX988_01733
Messenger RNA biogenesis [BR:
pmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FX988_01733
Transfer RNA biogenesis [BR:
pmes03016
]
Prokaryotic type
tRNA degradation factors
FX988_01733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
CSD
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QHJ11499
UniProt:
A0A857JHI9
LinkDB
All DBs
Position
complement(2010126..2012558)
Genome browser
AA seq
810 aa
AA seq
DB search
MSDDPFYQREKEKYENPVASREYLLELLTKAKKPLSFLEFCHLLNAEDEDSRIGIQRRLR
AMEREGQIEFNRDKKYAKLKLEELIQGRVIGHRDGFGFLKRDDGEKDLFIHNAQMSTVLH
GDVVLVKESGTDNRGRREARIAKIIEPRSEPIVGRYFFENGVGLVIPDDSRINHEITIPG
EYVNGARQGFIVVVEIVQRPRRRVNAIGKVLEVLGEHMAPGMEIDMALRTFDIPHVWPKG
VTKQISALTEHVPEEAKENRIDLRQLPLVTIDGEDARDFDDAVFCEPLEDGGWQLWVAIA
DVSYYVRPGTALDSEAQNRGNSVYFPEQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
ANGELAEHQFYEAVMNSKARLTYTKVWDLLKDEGQANPELHKRYAEQVPHLKNLHDMYRT
LKRRRNQRGAIEFETQESKFVFNAQRKIDTIVPVTRNDAHKLIEECMILANVAAAKTLSK
QKAEALYRIHDEPDSDRLSAFLSYLAEVGITHHISKDASPQEFTEVISKIQGRADQELIQ
TMLLRSMKQAVYSHENIGHFGLALDAYAHFTSPIRRYPDLVVHRALKATIDKKQQRKSKT
GGKAYTEEEVDALGEQCSMTERRADDATRDVSDWLKCEFMLDHVGDTFDGVIASVTSFGF
FVRLTEFHIDGLVHISALDNDFYQFDETKQHLVGENSGIVYRLGDPLEVKVAGVNLDERK
IDFVLAKAPPKPRGRKRAAKKSTSTKKDATKNTSGKESPVSKAGAKAASDSDKAGANKKK
PRTRRSSNKGGTASKPASKPRRSSSNKRKK
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgatcccttttaccagcgcgagaaagaaaaatacgaaaatccggtagcgagc
cgagaatatctgctcgaattactgactaaagccaaaaaaccgttatcctttcttgaattt
tgtcacctattaaacgcagaagatgaagatagtcgtatcggtattcaacgtcgtttgcgg
gcaatggagcgcgaagggcaaatcgaattcaatcgtgataaaaaatacgccaagcttaaa
ttagaagagctgattcaagggcgtgtgattggccacagagatgggtttggttttttaaag
cgcgatgatggggaaaaagacctatttattcataacgcccaaatgtctaccgtgctgcat
ggtgatgtagtgttggttaaagaaagcggcactgacaacagaggtcgtagagaagcccgc
atcgcgaaaatcatcgagccacgtagcgagcctattgtgggccgctacttttttgaaaac
ggcgtgggattagtcataccggatgatagccgtattaatcacgaaattactattccaggc
gaatacgtaaacggcgctcgtcaaggttttatcgtggtagtagagattgttcaacgtcca
aggcgccgagttaacgcgatcggtaaagtgttagaagtattgggtgaacatatggcgcca
ggtatggaaatcgacatggccctgcgcacattcgatattcctcatgtttggcccaaaggt
gtcactaagcaaatttccgctctgaccgaacacgtacctgaagaagccaaagaaaataga
attgatctacgccaactgcccttggttaccattgacggtgaggatgcccgcgattttgat
gacgcagttttttgcgaaccattagaagacggtggctggcaattatgggttgcaattgcg
gatgtgagttattacgtcagacctggcaccgcactagatagcgaagcgcaaaaccgcggt
aactcagtatacttccctgagcaagttatccccatgctgcccgaagtgctatccaatggt
ttatgctctttgaacccgcaggtcgaccgtttatgtatggtctgtgaaatgaccattagc
gcaaacggggagctagcagagcatcagttctatgaagcggtaatgaactccaaagcacgc
cttacctacaccaaagtgtgggatttattgaaagatgagggacaagcaaaccctgaattg
cataagcgttacgcggagcaggttccccatcttaaaaatctacatgatatgtaccgtaca
ttaaaacgtagacgcaatcagcgcggtgccattgaatttgaaacgcaagaaagtaagttt
gtgtttaatgctcagcgtaaaatagacaccattgtgcctgtcacgcgtaatgatgctcac
aaattgatcgaagagtgtatgattttagccaacgtagcggcggcaaaaaccttaagtaag
caaaaggctgaagcattatatcgcattcatgacgagccagactctgatagattgagcgca
tttttgtcttatctagctgaagtgggcatcacgcaccacatcagcaaggacgcgtctccg
caagaattcaccgaggtgatcagtaaaattcaggggagagcggatcaagagcttattcaa
actatgctgcttcgttcgatgaaacaagctgtatatagtcacgaaaatattggtcatttt
ggtttagcgcttgatgcctatgcgcactttacttcgcctattcgccgctatcctgatctc
gtggtacatcgtgctttaaaagccacgattgataaaaaacagcaacgaaaaagtaaaact
ggggggaaagcgtacacagaagaagaagtggatgctctaggggagcaatgctcaatgaca
gagcgacgggctgatgatgcaacgcgagacgtatcagactggctcaagtgcgaatttatg
ctcgaccatgttggggatacatttgatggggttattgcatccgtcaccagttttggcttc
ttcgtacgtctgactgaatttcatattgatgggttagtgcacatctctgcattagataac
gatttttatcagtttgacgaaaccaagcagcatttagtgggtgaaaattccggtattgtt
tatcgccttggtgatccgcttgaagtcaaagtggcaggggtgaatttagatgaacgaaaa
attgattttgtgttagccaaggctccgcctaaacctagaggaagaaagcgcgcagcaaaa
aaatcgacttcaactaaaaaagacgcaaccaaaaatacctcaggtaaagaaagcccagta
tcaaaagccggtgctaaagcagcaagtgacagcgacaaagctggcgcaaacaaaaagaaa
ccgcgcacgcgtcgttcgagtaataaaggcggtacagcctctaaacctgcttcgaagcca
cgccgctcatcgtcaaataagaggaagaagtaa
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