Pseudomonas mendocina NK-01: MDS_4366
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Entry
MDS_4366 CDS
T01473
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pmk
Pseudomonas mendocina NK-01
Pathway
pmk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MDS_4366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmk03021
]
MDS_4366
Transcription machinery [BR:
pmk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MDS_4366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
ING
TMPIT
ADIP
ATP-cone
Motif
Other DBs
NCBI-ProteinID:
AEB60397
LinkDB
All DBs
Position
4779419..4781266
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AA seq
615 aa
AA seq
DB search
MSVKAQQQSRLKELISRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAHFPGTVDGILAEYNRVTTEGGRLAEVLSGYIDPDDGSVPDEAA
APVPVKEGAAAEESDDEEEDESGDDEEEEGDGGPDPEEAARRFTAVAEQQEKVQKALKKH
GRGSKQAIEELATLAELFMPIKLVPKQYDALVTQVRDALDRLRAQERAIMQLCVRDARMP
RADFLRLFPGNEIDMDWAADLAKGKAKYAEALGNLQGDIQRCQQKLADLEAECSLSLAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtaaaagcgcaacagcaatctcgtttgaaagaattgatcagccgtggtcgcgag
cagggttacctgacgtacgcggaggtcaatgaccacctgccggaagacatttccgatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggacgccctgttgttggccgaagccgacaccgacgaggctgcagccgaa
gaagccgctgccgccctcgccgccgttgagaccgatattggccgcaccaccgacccggtg
cgcatgtacatgcgcgaaatgggtaccgtggaactgctgacccgcgaaggcgaaatcgaa
atcgccaagcgcatcgaggaaggcatccgcgaagtcatgagcgccatcgctcacttcccc
ggcactgtcgacggcatcctcgccgaatacaaccgcgtcaccaccgaaggcggccgcctg
gccgaagtcctcagtggctacatcgacccggatgacggcagcgtgcctgacgaagccgcc
gcccccgttcccgtcaaggaaggcgccgccgctgaagaaagcgacgacgaagaagaagac
gagagcggcgacgacgaggaagaagaaggcgatggcggcccggacccggaagaagcggct
cgccgtttcaccgccgtggccgagcagcaggaaaaagtccagaaggccctgaagaagcac
ggtcgcggcagcaagcaggccatcgaagagctggccaccctggccgagctgttcatgccg
atcaagctggtgcccaagcagtacgacgccctagtcacccaggtgcgcgatgccctcgac
cgcctgcgtgcgcaagagcgcgccatcatgcagctgtgcgtacgtgatgcgcgcatgcca
cgtgccgacttcctgcgcctgttcccgggcaacgaaatcgacatggactgggccgccgac
ctggccaagggcaaagccaagtacgctgaagccctgggcaacctgcagggcgacatccag
cgctgccagcagaagctggccgacctggaagccgaatgcagcctgagcctggccgagatc
aaggacatcaaccgtcgcatgtccatcggtgaggcgaaagctcgccgcgccaagaaggaa
atggtcgaggccaacctgcgtctggtgatctccatcgccaagaagtacaccaaccgtggc
ctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtggacaag
ttcgaataccgtcgtggctacaagttctcgacctacgccacctggtggattcgccaggcg
atcacccgctcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatgatcgag
acgatcaacaagctcaaccgcatctcccgtcagatgctccaggaaatgggccgcgagccc
actccggaagagctgggcgagcgtatggaaatgcccgaggacaagatccgcaaggtattg
aagatcgccaaagagccgatttccatggaaaccccgattggcgacgacgaagattcgcac
ctgggcgacttcatcgaggacagcaccatgcagtccccgatcgacgtagccacggtcgaa
agcctcaaggaagccactcgcgaagtactggctggcctcactgcccgtgaagccaaggtc
ctgcgtatgcgcttcggtatcgacatgaacaccgaccacaccctcgaggaagtgggcaag
cagttcgacgttacccgcgagcgtatccgtcagatcgaagccaaggcgctgcgcaagctg
cgtcacccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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