Pseudomonas mosselii: CLJ08_21700
Help
Entry
CLJ08_21700 CDS
T07806
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmol
Pseudomonas mosselii
Pathway
pmol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLJ08_21700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmol03400
]
CLJ08_21700
Enzymes [BR:
pmol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLJ08_21700
DNA repair and recombination proteins [BR:
pmol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLJ08_21700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ATB67098
LinkDB
All DBs
Position
complement(4708048..4711497)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASTAGRFTLLLTADSQAADRLEQELRF
FAPALPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELDHGILVVPITTALHRLAPT
RFLLGSSLVLDVGQKIDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKQPY
RIDLFDDEIETLRTFDPESQRSIDKVDSIRLLPAREFPMQKDQVTRFKARFRERFDVDFR
RSAIFQDLTSGIIPAGIEYYLPLFFEETATLFDYLPADTQVFSLPGVEQAAEHFWNDVRG
RYEERRGDLSRPLLPPAELFMPVEDCFARLKQWPRVVIGADDVEPGVGRERFPARALPNL
AIEAKANQPLAELSNFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVDGWADFVNG
GERLAITIAPLDDGLLLDDPSLALVAESPLFGQRVMQRRRREKRGEAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGHAFADPAADYATFSAGFP
FEETPDQQAAIEAVRADMLAGQPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVASAAAELAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQISADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGNQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTLLKLQAEKLGIKKV
DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPEERFNTLEAL
FERLTPQNP
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaac
ctgcccggcgccgccttgagcctggccatcgccgaggcggccagtaccgccggtcgcttt
accttgctgctgaccgccgacagccaggcggccgaccgactcgagcaggagctgcgcttc
ttcgcgccggcgctgccggtgctgccgttccccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctctaccggctgccggag
ctggaccacggcatcctcgtcgtgccgatcaccaccgccctgcaccgcctggcccccacg
cgcttcctgctgggcagcagcctggtgctggacgtcggccagaagatcgacgtcgagcag
atgcgcacgcgcctcgaggccagcggctaccgctgcgtcgacacggtctacgagcatggc
gagttcgccgtgcgcggcgcgctgatcgacctgttccccatgggcagcaagcagccgtac
cgcatcgacctgttcgacgacgagatcgagaccctgcgcaccttcgacccggagtcgcag
cgctcgatcgacaaggtcgactcgatccgcctgctgccggcgcgcgagttccccatgcag
aaggaccaggtgacgcgcttcaaggcgcgcttccgcgaacgcttcgatgtggacttccgc
cgcagcgccatcttccaggaccttaccagcggcatcatccccgccggcatcgagtactac
ctgccgctgttcttcgaagagaccgccaccctgttcgactacctgccggcggacacccag
gtgttctccctgccgggcgtggagcaggccgccgagcacttctggaacgacgtgcgcggg
cgctatgaagagcgccgcggcgacctcagccggccgctgctgccgccggcggagctgttc
atgccggtggaggactgcttcgcccgcctcaagcaatggccacgggtggtgatcggtgcc
gacgacgtcgagcccggcgtcggccgcgagcgctttccggcccgcgccctgcccaacctg
gccatcgaggccaaggccaaccagccgctggcggagctgtcgaacttcctcgaccagttc
cccggccgggtgctgttcacggcggaatcggcgggccggcgcgaagtgctgctggagctg
ctcgaacgcctgaagctgcgcccgcacaccgtcgacggctgggccgacttcgtcaatggc
ggcgaacgcctggcgatcaccatcgcgccgctggacgacggcctgctgctggacgacccc
agcctggccctggtcgccgaaagcccgctgttcggccagcgcgtgatgcagcgccggcgc
cgtgagaaacgcggcgaggcggccaacgacgcggtgatcaagaacctcaccgagctgcgc
gaaggcgccccggtggtgcacatcgaccacggcgtgggccgctacctgggcctggcgacc
ctggagatcgacggccaggccgccgagttcctcaccctcgaatacgccgagggcgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcgcctttgcaccggctgggctccgaagcctggcagaaagccaagcgcaaggccgcc
gaacaggtgcgcgacgtcgccgccgagctgctcgacatctatgcccgccgcgccgcgcgc
aaaggccatgccttcgccgacccggccgccgactacgccaccttcagtgctggcttcccg
ttcgaggaaacccccgaccagcaggccgccatcgaggcggtacgcgccgacatgctcgcc
ggccagcccatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaagtggcc
atgcgcgccgccttcatcgccgtgcacagtggccgccaggtggcggtgctggtacccacc
accctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtg
aaggtcgaggtgatgagccgcttcaagtcggccaaggaagtcgccagcgcagcggcggaa
ctggccgaaggcaagatcgacattctcatcggcacccacaagctgctgcaggatgatgtg
cgcttcaaggacctgggcctggccatcatcgacgaggaacaccgcttcggcgtgcgccag
aaagaacagctcaaggccctgcgcagcgaagtggacatcctcacgctgaccgcaacgccg
attccccgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccact
ccgccggccaggcgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaggaagcgctgctgcgcgaactgctgcgcggcggccaggtgtactacctgcacaacgac
gtcaagaccatcgagaagtgcgccgcggaactggccgaactggtgcccgaggcgcgcatc
ggcatcggtcacgggcagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccc
agcgccaacaccattgtcatcgagcgcgccgacaagttcggcctggcccagctgcaccag
ctgcgcggccgggtcgggcgtagccaccaccaggcctatgcctacctgctgacgccgccg
cgccagcagatcagtgccgatgccgagaaacgcctggaggccatcgccaacacccaggac
ctgggcgcgggcttcgtcctggccaccaacgacctggagatccgcggcgccggcgaactg
cttggcgaaggccagagcgggcagatccaggccgtcggcttcaccctgtacatggaaatg
ctcgagcgcgcggtcaaggccatccgcaagggcaaccagccgaacctcgagcagccgctg
ggcggcggcccggagatcaacctgcgcctgccggcgctgatccccgaggactacctgccc
gacgtgcatgcacgcctgatcctctacaagcgcatcgcctcggcggccgacgaagagggc
ctcaaggacctgcaggtggaaatgatcgaccgcttcggcctgctgccggagccgaccaag
aacctgatgcgcctgaccctgctcaagctgcaggcggaaaagctcggcatcaagaaagtc
gacgccggccccaacggcggcaagctcgagttcgaggccgagaccccggtcgacccgctg
accctgatcaagctgatccagggccagcccaaacgctacaagttcgaaggcgcgacccag
ttccgcttcctggtgccgatggaacgccccgaagaacgtttcaacaccctggaagcgctg
ttcgagcgcctcactccacaaaatccataa
DBGET
integrated database retrieval system
