Paenibacillus mucilaginosus 3016: PM3016_5056
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Entry
PM3016_5056 CDS
T01757
Name
(GenBank) HrpA-like helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pmq
Paenibacillus mucilaginosus 3016
Brite
KEGG Orthology (KO) [BR:
pmq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmq03019
]
PM3016_5056
Enzymes [BR:
pmq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PM3016_5056
Messenger RNA biogenesis [BR:
pmq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PM3016_5056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
HA2_N
HA2_C
Motif
Other DBs
NCBI-ProteinID:
AFC31784
UniProt:
H6NP74
LinkDB
All DBs
Position
complement(6077833..6079380)
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AA seq
515 aa
AA seq
DB search
MSVSAASADQRRGRAGRLAPGVCYRLWSEADHRQLPPQRVPEIREADLAPLALELAAWGA
GGPDALPWLDPPPAGAYAQAAGLLQLLEALDGRGAVTVHGRAMAALGLHPRLAHMLLRAK
ELGLGGLACDLAALLGERDVLGAADDADLRSRVELLRSGGRQGRGADDAALQRIAAEAKV
WRRELGLRAGEGEGSPASSGVCLALAYPERIGQNRGGGRYLLSSGRGAVLPRQQLLWNAA
YIVAAELDDQGAESRIRLAAPLEEEELRRGAAGAIRTEESIAWDRGAGAVRGRRRELLGA
LLLKETVLAELNPERQLQALLEGIRLEGLGLLPWSKAARQLRERIGFLHRHRGDFPNVSD
EALLGSLEEWLAPHLYGMKSRGDLQRVPLFEALESLLPWPQRQQLGEFVPTHVTVPSGSR
IPVDYSNPDAPALAVRLQELFGLRETPRIAGGKVGLVLHLLSPAQRPVQVTKDLASFWRE
GYFEVKKDLKGRYPKHYWPDDPLEAVPTSRVRPRT
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtctcggccgcctccgccgaccagcggcggggccgcgccggccggctggcaccc
ggcgtctgctaccggctctggtcggaggccgaccaccgccagctgccgccccagcgcgtg
cccgagatccgcgaggcggatctcgccccgctggcgctggagctggctgcctggggcgcg
ggcggcccggacgcgctgccgtggctcgatccgccgccggccggcgcctatgcgcaggcg
gccgggctgctgcagctgctcgaggcgctcgacgggcgcggcgccgtcacggtccacggc
cgcgcgatggcggctctcgggctgcacccgcgcctggcgcacatgctgctgcgcgccaaa
gagctcggcctcggcggccttgcgtgcgatctcgccgccctgctcggcgagcgggacgtg
ctcggcgcggccgacgacgccgatcttcgctcgcgcgtcgagctgctccgctcgggcggc
cgccagggccgcggggccgatgatgcggccctgcagcggattgccgcggaggcgaaggtg
tggcgccgcgagctcggcctgcgggccggcgaaggcgagggcagcccggcatcgagcggg
gtctgcctggcgctcgcctatccggagcggatcggccagaaccgcggcgggggccgctat
ctgctcagcagcggccgaggcgccgtgctgccccgccagcagctgctctggaacgctgcg
tatatcgtagcggcggagctggacgaccagggggcggagagccgcatccggctggccgcc
cccctggaggaagaagaactgcgccgcggggccgccggggcgatccgcacggaggagagc
atcgcgtgggaccggggcgccggtgcggtccgcggccgcaggcgggagctgctcggcgcg
ctgctcctgaaggagacggtgctcgcggagctgaacccggaacgccagctgcaggcgctg
ctcgaaggcatccggctcgagggcctggggctgctgccctggtcgaaggccgcccggcag
ctccgcgagcgcatcggcttcctgcaccggcaccgcggggacttcccgaatgtgtccgac
gaggcgctgctcggcagcctggaggagtggctcgccccgcacctctacggcatgaagagc
cggggggacctgcagcgcgtgccgctgttcgaggcgctggagtcgctgctcccctggccg
cagcggcagcagctcggcgagttcgtgccgacgcacgtcacggtgccgagcggctcccgg
atcccggtcgactacagcaacccggacgctccggcgctggccgtgcggctgcaggagctg
ttcggcctgcgggagacgccgcggatcgccggcgggaaggtgggccttgtgctgcacctg
ctctcgccggcgcagcgccccgtgcaggtgacgaaggatctcgccagcttctggcgggag
gggtactttgaggtgaagaaggacctcaagggccgctatccgaagcactactggccggac
gatccgctggaggcggtgccgaccagccgggtacgcccccggacgtaa
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