Podarcis muralis (common wall lizard): 114582618
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Entry
114582618 CDS
T06059
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114582618 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmua03041
]
114582618 (DDX42)
Enzymes [BR:
pmua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114582618 (DDX42)
Spliceosome [BR:
pmua03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
114582618 (DDX42)
Complex B
114582618 (DDX42)
Complex C
U2 SnRNP specific factors
114582618 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
DUF4238
Motif
Other DBs
NCBI-GeneID:
114582618
NCBI-ProteinID:
XP_028559613
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All DBs
Position
13:complement(18731552..18757242)
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AA seq
949 aa
AA seq
DB search
MKICILDTRIADTMNWNKGGPGTKRGFGFGGFSISTGKKEEPKLPQQSHSAFGAPGSAGF
GKTPPPQLPSFYKIGSKRANFDEENAYFEDEEEDSNNVDLPYIPAENSPTRQQFHSKPPD
SDSEDDPLEAFMAEVEDQAARDMKRLEDKDKERKNTKGIRDDIEEEDDQEAYFRYMAENP
TAGVVPEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFHDEHEEITSLT
PQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL
SGRDMIGIAKTGSGKTAAFIWPMLVHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKR
FGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDE
ADRMFDMGFEYQVRSIASHVRPERQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEAN
EDITQIVEIFSSGPNKWNWLTSRLVEFTSSGSVLLFVTKKANADELANNLKQEGHSLGLL
HGDMDQSERNKVISDFKKGTFPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR
TGRAGEKGVAYTLLTHKDSNFAGDLVRNLEGANQHVTKELLDLAMQNAWFRKSRFKGGKG
KKLNIGGGGLGYRERPGLGSESVDRGSNSVMVNYEAYKPSSGAMGDRLSAMKAAFQSQYK
SHFVAASFSNQKTGSSSAGASGWTSAGSLNSVPSNSAQQNSARPDSPMGMAGMPKGMTGF
TSAGNLNSVPTFPSPGVQGFNSPNAGNSNREGSSGGRERYGENRGSGRHGGDGQRHGDGS
GRHGEGQRHGEGYRHGDNRHGDSHRHGESRHAGGGSSSSSRHGESRNNGDSSRNSGESRS
SENRNTESRKDGNSRENNKADGGSSRDNSKTDGFVVPEPPKRKKSRWDS
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatatgtatattagacacacgcattgctgacaccatgaattggaacaaaggtggc
cctggcaccaagaggggctttggtttcggtggcttctccatatccactgggaagaaggaa
gagccaaaactccctcagcagtcccacagtgctttcggagctcctggttcagctgggttt
ggaaagacaccaccaccacagctgccttctttttacaagattggatcaaagcgagcaaac
tttgatgaggagaatgcgtactttgaggatgaggaggaagattccaataacgttgacttg
ccatacattcccgctgagaactcccccactcggcagcagttccattccaaaccacctgac
tcagacagcgaagatgacccattggaggcattcatggcagaggtggaggatcaagctgct
agagacatgaagagattggaagacaaagacaaggaaagaaaaaatacaaagggtatacgc
gatgatattgaagaggaagatgatcaagaagcatatttccgttacatggcagaaaatccc
actgctggtgtggttccagaagaggaggaggacaacctggagtatgacagcgatggcaat
ccaatagcaccatccaaaaaaatcattgaccctcttcctcctattgatcattcagagatt
gaatacccaccgtttgagaaaaatttccacgacgagcatgaagaaatcaccagcctcacc
ccgcagcaagtggtggagctgcgccacaagctgaatctccgggtctctggagcagctcct
ccaagaccaggaagcagttttgctcattttggttttgacgagcaacttatgcatcaaatt
aggaaatcagaatacactcaacccacacctatccaatgccagggtgttccagtggccctg
agtgggagagacatgatcggtattgcaaagactggcagtgggaaaactgcagccttcatt
tggcccatgttggttcacatcatggatcagaaggagctggagccaggagatggtcccatc
gcagtgattgtatgtccaaccagagagctgtgccagcagatccacgctgaatgcaagcgc
tttgggaaggcctacaatctacgctccgtagcagtgtatggtggaggaagcatgtgggag
caggccaaggctctgcaggaaggagcagaaattgttgtctgcactccaggccgtttgatt
gaccacgtgaagaagaaagcaaccaaccttcagagggtcacttaccttgtgtttgatgaa
gccgacagaatgtttgacatgggtttcgaataccaagtcagatcaattgccagtcacgtg
cgccctgaaaggcagactctactgttcagtgcaactttccggaagaagatcgagaagctg
gccagagacattctaattgatccaattcgagtggtgcaaggagatatcggagaggcaaat
gaagatatcactcagattgtggagatcttctcctctggccccaacaagtggaactggctg
accagccgcctagtggagttcacctcttcggggagtgtcctcctctttgttaccaagaag
gcaaatgcagatgagctggccaacaaccttaagcaggaggggcacagcctgggtctgctg
catggtgacatggaccagagtgaaagaaacaaggtcatctcggacttcaagaaggggacc
ttcccagttctggttgctactgatgtggcagctcgtggtctggatattccttccattaag
actgtgatcaattatgatgtggcccgtgatattgacacccacacccaccgaattggccgc
acggggagagcaggagagaagggcgtggcctacaccctgctgactcacaaggatagcaac
ttcgctggagatcttgttcggaatttggaaggggccaatcagcacgtcacaaaagagctc
ttggacttggccatgcagaatgcttggttccggaaatcgcgtttcaagggagggaagggc
aagaagttaaacattggcggtggtggactggggtaccgtgagcggcctggcctaggatca
gagagcgtggaccgtgggagtaacagtgtcatggttaactatgaggcatacaaaccgtcc
tcaggagcaatgggggaccggttgtctgcaatgaaggcagcattccagtcccagtataag
agccatttcgttgctgccagctttagcaaccagaagacgggcagctcttcagcaggtgcc
agtgggtggacgagtgccggcagcttgaactccgtgccaagcaactcagcacagcagaac
tcggcaagacccgacagtcccatgggcatggcgggcatgccaaagggcatgacaggcttc
acaagcgccgggaacttaaacagcgtccccaccttccccagtcctggtgttcaggggttc
aacagtccgaacgccggcaacagcaacagagagggcagcagcggaggtagagaaaggtac
ggcgagaaccggggcagcggtcgccacggcggcgatggccagcgccacggcgacgggagc
ggtcgccatggtgaaggccagcgccacggggaaggctatcgccacggggacaaccgccac
ggggacagccatcgccacggggaaagccgacatgccggcggtgggagcagcagcagcagt
cgccacggggaaagccggaacaatggggacagcagccggaacagcggcgaaagcagaagc
agtgagaataggaacactgagagcaggaaagatggcaacagcagggagaacaacaaggca
gatggaggcagtagtagggacaacagcaagacagatggctttgtcgttccggagccccca
aagcgcaagaagagtcggtgggacagctaa
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