Petrimonas mucosa: ING2E5A_0640
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Entry
ING2E5A_0640 CDS
T04553
Symbol
rnr
Name
(GenBank) Ribonuclease R {ECO:0000255|HAMAP-Rule:MF_01895}
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pmuc
Petrimonas mucosa
Pathway
pmuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ING2E5A_0640 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmuc03019
]
ING2E5A_0640 (rnr)
03016 Transfer RNA biogenesis [BR:
pmuc03016
]
ING2E5A_0640 (rnr)
Enzymes [BR:
pmuc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ING2E5A_0640 (rnr)
Messenger RNA biogenesis [BR:
pmuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ING2E5A_0640 (rnr)
Transfer RNA biogenesis [BR:
pmuc03016
]
Prokaryotic type
tRNA degradation factors
ING2E5A_0640 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
Motif
Other DBs
NCBI-ProteinID:
SCM55927
UniProt:
A0A1G4G4K7
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All DBs
Position
I:784476..786620
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AA seq
714 aa
AA seq
DB search
MSKKTSVAESVSKPKKKELEQLVVDFLTANKEKQFNYKQIAAAINIRGEEGRRVLIKVLD
RLRDYDVLLETSRGRYKINNRGLILEGRFERRSNGKNFFVPDDDANIIYIPERNSKHAMN
GDRVRVQLLAKRKHADTEGVVIEILERAQTRFVGVLEVQKYFAFLVMDSKFLANDIFIPM
DELNGAKNGDKVVVEIVEWPEKANNPVGKVIDVLGKPGNNTTEMHAILAQYGLPYSYPAE
VEKAAELIPDKIDKKEIARREDFRNVFTLTIDPADAKDFDDALSLRKLSPTLWEVGVHIA
DVTHYVKPGDLIDREAERRATSIYLVDRTIPMLPERLSNVLCSLRPKEDKLCFSVIFELD
ENAEIKKSRITRTVIHSDVRLTYEEAQAVIETGKGDFSSEILVLNDLAQKMRERRFANGA
INFERYEVKFNLDEKGKPLGVYFKESKEANHLIEEFMLLANKTVAESIGKVPKNKNAKTF
VYRIHDIPDSEKLDTLNTFILRFGHKIKTEGSKVEVAKSINSLLDKVQGRPEENLIETIA
IRTMSKAVYSTKNVGHYGLAFDYYTHFTSPIRRYPDMMVHRLLERYLNGGSSVDQSELEM
ECKHSSDMEQVAANAERDSIKYKQVEFMADKVGKVYDGVVSGITEWGLYVEINENKCEGM
IPIRELDDDFYELDEKNYRLVGRRTKREYRLGQPLSIQVARANLERKQLDFVLA
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaaaacatcagttgcggaatcggtgtcaaagccgaagaagaaagagctggaa
cagcttgttgtcgatttcctgactgccaataaagagaaacagtttaactacaagcagata
gccgctgcgattaacatccggggagaagaggggcggcgcgtattgataaaagtcctcgac
cggctacgcgattatgacgtattgctggagacttctcgcggaagatacaagataaataac
cgcggattgattcttgaaggccgttttgagagacgaagcaatggtaagaacttctttgtt
cccgatgacgatgcaaacatcatctatattcccgaacggaacagcaagcatgcaatgaac
ggcgaccgggtccgtgttcagttgcttgccaagaggaaacatgcagacaccgaaggtgtg
gtgattgagattctggaacgcgcccagacccggtttgtgggggtattggaggtacagaaa
tattttgctttcctggtgatggacagcaagtttttggccaacgatatttttattccgatg
gatgaactcaacggtgccaagaatggggacaaagttgtggtggagattgtggagtggccc
gaaaaagccaacaatccggttggcaaagtgatcgacgtattgggcaaaccgggtaacaat
accaccgagatgcatgccatcctggcgcaatacggattaccgtacagctatcccgccgaa
gtggagaaagcggcggaactgattcccgacaagatcgacaagaaggagattgcgcgacgg
gaggatttccgaaatgtatttacgctgaccatcgatccggccgatgccaaagatttcgat
gacgccctgtcgcttcgtaaactttcacccacattgtgggaggtgggcgtacatattgcc
gacgtaacccattatgtgaaaccgggcgacctgattgaccgggaggcagagaggagggca
acctccatctaccttgtcgacaggaccatcccgatgttgcccgagaggttgagtaacgtt
ctctgttcactcagaccgaaggaggacaagctctgtttttcggtaatctttgaactcgac
gagaatgcggagattaaaaagtcgcgcattacccgtaccgttatccattccgatgtcagg
cttacctatgaagaggcccaggccgtaattgagaccggtaaaggcgatttctcgtcggaa
atcctggtactgaacgacctggcacagaagatgcgggaaaggcgttttgccaatggagcc
atcaattttgagcgctatgaggtgaagttcaacctcgatgaaaaaggtaaaccgctgggt
gtctatttcaaggagtcgaaagaagcgaaccaccttatcgaggagttcatgctgctggcc
aacaagacggtggcggaatcgataggaaaggtgccgaaaaacaagaatgcaaaaacattc
gtctaccgcatccacgatattcccgattccgagaagctggataccctgaatacctttatt
ctccgcttcggacacaagataaagacagaagggagcaaggtggaggtggcgaagagtatc
aattcgttgctggacaaggtgcagggacgtcccgaggagaacctgatcgagacgattgcc
atccgcaccatgtcgaaagcggtctactctaccaagaacgtggggcattacggtctggct
ttcgattactatacccatttcacctccccgatccgaaggtaccccgacatgatggtgcac
cggctgctggagcgttatctcaatggaggcagctctgtcgaccagtcagagttggagatg
gagtgcaagcactcgtccgacatggagcaggtggctgccaatgccgaacgcgattccatc
aagtataagcaggtggaatttatggctgacaaggtgggtaaggtgtatgacggtgtggta
tcgggcattaccgagtggggactctacgtggagatcaacgagaacaagtgcgagggaatg
atcccgatccgcgaactggacgacgatttctacgaactcgacgagaagaattaccggctg
gtaggccgacgtaccaagcgcgaataccgccttggtcaaccactctccattcaggttgca
cgtgccaacctcgaaaggaagcagctggacttcgtgctggcctga
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