Pseudomonas mucidolens: NCTC8068_01673
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Entry
NCTC8068_01673 CDS
T08935
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmud
Pseudomonas mucidolens
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmud03032
]
NCTC8068_01673 (topA)
03400 DNA repair and recombination proteins [BR:
pmud03400
]
NCTC8068_01673 (topA)
Enzymes [BR:
pmud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NCTC8068_01673 (topA)
DNA replication proteins [BR:
pmud03032
]
Prokaryotic type
DNA Topoisomerases
NCTC8068_01673 (topA)
DNA repair and recombination proteins [BR:
pmud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCTC8068_01673 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
SQH32705
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All DBs
Position
1:1840466..1843087
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AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLSPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTTKGAT
VRFDVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIEGEFGKKYLPESPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDVLKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPDSGMRANQPVMT
DIACLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNATCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVLEIMPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFYDGGKWKVEDKRQGA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggcaacgagtacgtggtgaagtcgagtatcggccatatccgcgacttgcccacgagc
ggctcggcgagcgccagcaaggagcctgccgccaagcgcggcaaggcggctgcgggcgaa
ggtccggtgctctcgccgaaagagaaagcccgcaagcagttggtctcgcgcatgggtgtc
gatcctgatcatggctggaaagccaagtacgagatcctcccaggcaaggaaaaagtcatc
gaagagctgcgccggctcgccaaggatgctgacaccatctatctcgcgacggacttggac
cgcgaaggggaagccattgcctggcacctgcgggaagccattggcggcgatgacagccgt
tacaagcgggtggtgttcaacgaaatcaccaagaaggccatccaggaagccttttccaag
ccgggcgaactggacatcgatcgtgtcaacgcccagcaggcgcggcgtttcctcgaccgc
gtggtgggctacatggtctcgccgctgttgtgggcgaagattgcccgtggcctgtccgcc
ggccgtgtgcaatcggtcgcggtgaagctggtggtcgagcgtgagcgcgagattcgcgcg
ttcattccggaagagtactgggaagtccacgctgacctgggtaccaccaagggcgctacc
gtgcgctttgacgtggctcgcgagaagggcgaggccttcaagccgctcaacgaagcccag
gccatggcggcactggaaaagctcaaggcgtccagctacagcatcgtcaagcgcgaagac
aagccgaccagcagtaagccctcggcgccgtttatcacctccaccctgcaacaggccgcg
agcaaccgcctgggctttggggtgaagaagaccatgatgatggcccagcgtttgtatgaa
gcaggctacatcacttacatgcgtaccgactccaccaacctgtcggtggacgcggtggcg
atggcgcgtacctatatcgaaggcgaattcggcaagaagtacctgccggaatccccgaac
gtctacagcagcaaggaaggcgcacaagaggctcacgaagcgattcgcccgtccgatgcc
aataccgagccaagcaagctgagcggcatggagcgcgacgctgagcgcctctacgagctg
atctggcgccagttcctcgcctgccagatgctgccggcgcaatacctgtccaccaccgtc
agtgtcggtgccggggacttcgagttgcgtgccaaggggcgcatcctcaagtttgacggc
tacacccgtgtgatgccgcaaatcgccaagccgggcgatgacgacgtgctcccggacatg
gcccagggtgacgtgctgaagttgatcaagcttgatccgtcccagcacttcaccaagcca
ccggcgcgttattcggaagccagtctggtcaaggagatggaaaaacgtggtatcggtcgt
ccttcgacttacgcggcgatcatctccaccatccaggaccgtggttatgtggccctgcac
aaccgtcgtttctattcggaaaagatgggcgatatcgtcaccgaacgactctccgagagt
ttctccaacctgatggactacggtttcaccgccggcatggaagagaacctcgatgatgtg
gcccagggcgagcgcgactggaaaaacgtgctcgacgagttctacggcgacttcaagaag
aagctcgaggtggcggaaagccctgacagcggcatgcgcgccaaccagccggtgatgacg
gatattgcgtgcctgacctgtgggcgtccgatgcagatccgcaccgcgtctaccggcgtg
ttcctggggtgctcgggttacagcttgccgccgaaagagcgttgcaaggccaccgtcaac
ctggtgccgggcgatgaaattgccgccgatgacgaaggtgaatccgagtcgctggtactg
cgtggcaagcaccgttgcccaatctgcagcactgcgatggacgcctatctgctggatgag
aagcacaaactgcacatctgcggtaacaatccggattgcaacggctacgagatcgaggaa
ggcacttaccgcatcaagggctacgaaggtccgagcctggagtgcgacaagtgtggcagt
gagatgcagctcaagacgggccggttcggcaagttcttcggctgcaccaacgcgacctgc
aagaacacccgcaaactgctgaaaagcggtgacgcggcgccgccgaagatggacccggtg
aagatgcctgaactcaaatgcgagaaggtcaacgacacctacatcctgcgtgacggcgct
tcgggcctgttcctggctgccagccagttcccgaaaaaccgcgagacccgtgcaccgctg
gtgctggaaatcatgccgcacaaggatgaaatcgatcccaagtaccacttcctttgcgag
gcgccgaagaaggaccccgacggtcgtccggcggtgatccgctacagccgcaagaccaag
gagcagtacgtgcagaccgaagtggatggcaagcctaccggttggaaggcgttttacgac
ggcggcaagtggaaggtcgaggacaagcgccagggcgcctga
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