Pseudomonas multiresinivorans: G4G71_20230
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Entry
G4G71_20230 CDS
T07281
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmui
Pseudomonas multiresinivorans
Pathway
pmui03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G4G71_20230 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmui03400
]
G4G71_20230 (mfd)
Enzymes [BR:
pmui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G4G71_20230 (mfd)
DNA repair and recombination proteins [BR:
pmui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G4G71_20230 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
QJP10105
UniProt:
A0A7Z3BNE7
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All DBs
Position
4470817..4474281
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AA seq
1154 aa
AA seq
DB search
MSVLRIPTLPTAAGKQSWGNLPGAALSLAIAEAAGPAKRFTLLLTADSQSAERLEQELRF
FAPDLPVLQLPDWETLPYDVFSPHQDIISQRVAALYQLPELRRGVLVVPITTALHRLAPA
KFLLGSSLVLDVGQKLDVEQMRSRFEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSELPY
RIDLFDDEIETLRTFDPETQRSIDKVESIRLLPAREFPLRKEAVTGFRGRFRERFDVDYR
RCPIYQDLASGLTPAGIEYYIPLFFEDGETSTLFDYLPQDTQVFSLPGIETAAEQFWTDV
RNRYEDRRYDPERPLLPPAEVFLPVEDCFARLKNWPRVVVSPEPIETGVGRERFPAEALP
ELAIEAKATEPLARLRQFIEQFDGRILFTAESAGRREVMLELLARLKLRPVEVEGWPGFL
AHKDRLAITIAPMDEGLLLDADQGQPGIALVAESPLFGQRVMQRRRREKARDGGENVIKN
LTELREGAPVVHIDHGVGRYIGLITLEIDGQNAEFLALQYADEAKLYVPVANLHLIARYT
GSDDALAPLHKLGSETWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFKDPQVDYATF
SAGFPFEETPDQQTAIEAVVADMLSEKPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVA
VLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVEGAIAQLAEGKVDIVIGTHKL
LQDDVKFKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDL
SIIATPPARRLSVRTFVMEEQKSVIKEALLRELLRGGQVYFLHNEVKTIEKCARDLAELV
PEARIGIGHGQMNERDLERVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGL
AQLHQLRGRVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIR
GAGELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPDINLRVPALIP
EDYLPDVHARLILYKRIANAADEDGLRELQVEMIDRFGLLPEPAKNLIRLTLLKLQAEKL
GIVKVDAGPQGGRVEFATDTCVDPLVLIKMIQSQPNRYKFEGATLFKFQVPMERPEERFN
TLEALLERLTPQTH
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtattgcgcattcctacattgccgaccgcagccggcaaacaatcctggggcaac
ctccccggggccgccctgagcctggccatcgctgaagcggccggcccagccaaacgtttc
accctgttgctgaccgccgacagccagagcgccgagcgcctggagcaggagttgcgcttc
ttcgcgccagacctgccggtactgcagctgcccgactgggaaaccctgccgtacgacgtg
ttctcgccgcaccaggacatcatttcccagcgcgtcgccgccctttatcagttgcccgaa
ctgcgccgcggcgtgctggtggtgcccatcaccaccgccctgcaccgcctggcgccggcc
aagttcctgctgggcagcagcctggtgctggacgtcggccagaagctcgacgtcgagcag
atgcgcagccgcttcgaggctgccggctatcgctgcgtggataccgtctacgaacacggc
gagttcgccgtgcgcggtgcgctgatcgacctgttccccatgggcagcgaactgccttac
cgaatcgacctgttcgacgacgaaatcgagacgcttcgtaccttcgatccggaaacccag
cgctccatcgacaaggtggagagcattcgcctgctgccggcgcgcgagttcccgctgcgc
aaggaagcggtgaccggcttccgcggccgcttccgcgagcgcttcgatgtcgactaccgc
cgctgcccgatctaccaggacctggccagcggcctgacacctgccggcatcgagtactac
atcccgctgttcttcgaagatggcgagacatcgacgctgttcgactacctgccgcaggac
acccaggtgttctccctgccgggcatcgagaccgccgccgagcagttctggaccgacgtg
cgcaaccgctacgaagaccgtcgctacgacccggagcgcccgctgctgccgcccgctgaa
gtcttcctgccggtggaagactgctttgcccgcctgaagaactggccacgcgtagtggtc
agccccgagccgatcgagaccggcgtcggccgcgagcgcttccccgccgaggcgctgccg
gaactggccatcgaggccaaagccaccgagccactggcgcgactgcgccagttcatcgag
cagttcgacgggcgcatcctcttcaccgccgaatcagccggccgtcgtgaagtgatgctg
gaattgctggcgcgactgaagctgcgcccagtggaagtagaaggctggccgggcttcctg
gcgcacaaggatcgcctggcgatcaccatcgcgccgatggacgaaggcctcctgctggac
gccgaccagggccagcctggcatagccctggtggccgagagcccgctgttcggccagcgc
gtcatgcagcgccggcgccgcgagaaggctcgcgacggtggcgagaacgtcatcaagaac
ctgaccgagctgcgcgaaggcgcaccggtggtgcacatcgaccacggggtcggccgctac
atagggctgatcaccctggagatcgacggccagaacgccgaattcctcgccctgcaatac
gccgacgaagccaagctctacgtgccggtggccaacctgcacctgatcgcccgctacacc
ggcagcgacgacgccctggcgccgctgcacaagctgggttcggaaacctggcagaaggcc
aagcgcaaggccgccgaacaggtccgcgacgtcgccgccgaactgctggacatctatgcc
cgccgcgccgcgcgcaaaggctacgcattcaaggacccgcaggtcgactacgccaccttc
tccgccggcttccccttcgaggaaaccccggaccagcagaccgccatcgaagccgtggtc
gccgacatgctctcggagaagccgatggaccgcctggtctgcggcgacgtgggcttcggc
aagaccgaagtggcgatgcgcgcggccttcgtcgcagtgcacagcggcaagcaggtcgcc
gtgctggtgcccaccaccctcctcgctcagcagcactacaacagcttccgtgaccgcttc
gccgactggccggtgacggtcgaggtaatgagccgcttcaagtccgccaaggaagtcgag
ggcgcgatagcgcagttggcagaaggcaaggtcgacatcgtcatcggcacccacaagctg
ctgcaggacgatgtgaagttcaagaacctcggcctggtcatcatcgacgaggaacaccgc
ttcggtgtgcgccagaaggagcagctcaaggcgctgcgcagcgaggtggacatcctcacc
ctcaccgccacgccgatcccgcgcacgctcaacatggcggtcgccggcatgcgcgacctg
tcgatcatcgccacgccgccggcgcgccgtctctccgtgcgcaccttcgtcatggaagaa
cagaagtcggtgatcaaggaagccctgctgcgcgaactgctgcgcggcggccaggtgtac
ttcctgcacaacgaagtgaagaccatcgagaagtgcgcccgcgacctggcggagctggtt
cctgaggcacgcatcggcatcggccacgggcagatgaacgaacgcgatctggaaagggtg
atgagcgacttctaccacaagcgcttcaacgtgctggtggcctcgaccatcatcgagacc
ggcatcgacgtgccgagcgccaacaccatcctcatcgagcgcgccgacaagttcggcctg
gcccagttgcaccagctgcgcggacgcgtcggccgcagccaccaccaggcctacgcctac
ctgctcactccgccgcgaaagcagatgaccccggacgccgagaagcgcctggaagccatc
gccaacgcccaggacctgggcgccggcttcgtgctggccacccatgacctggaaatccgc
ggcgccggcgagctgctcggcgacggccagagcgggcagatccaggcagtgggcttcacc
ctctacatggaaatgctcgaacgcgcggtgaaggccatccgcaaaggtgagcagccgaat
ctcgagcagccgctgggcggcggcccggacatcaacctgcgcgtaccggcgctgattccg
gaagactacctgccggacgtccacgcccgcctgatcctctacaagcgcatcgccaacgcc
gccgacgaagacggcctgcgcgaactgcaggtggaaatgatcgaccgattcggcctgctg
ccggagccggcgaagaacctgatccgtctgactttgctgaaactgcaggcggaaaagctc
gggatcgtgaaggtagatgccggcccccagggaggccgggtagaattcgccaccgatacc
tgcgtcgacccgctggtgctgatcaagatgatccagagccagcccaatcggtacaaattc
gaaggggccaccctcttcaaattccaggtgcccatggagcgcccggaagaacgattcaat
acgctggaagcgctgctcgagcgcctcacgccacagactcactaa
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