KEGG   Prunus mume (Japanese apricot): 103326691
Entry
103326691         CDS       T03196                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03020  RNA polymerase
pmum03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103326691
  09124 Replication and repair
   03420 Nucleotide excision repair
    103326691
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmum03021]
    103326691
   03019 Messenger RNA biogenesis [BR:pmum03019]
    103326691
   03400 DNA repair and recombination proteins [BR:pmum03400]
    103326691
Transcription machinery [BR:pmum03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     103326691
Messenger RNA biogenesis [BR:pmum03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103326691
DNA repair and recombination proteins [BR:pmum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103326691
SSDB
Motif
Pfam: SHS2_Rpb7-N S1 Sod_Cu Vg_Tdu
Other DBs
NCBI-GeneID: 103326691
NCBI-ProteinID: XP_008227149
LinkDB
Position
LG3:complement(16180440..16185345)
AA seq 176 aa
MFFHIVLERNMQLHPRHFGRNLRENLVAKLMKDVEGTCSGQHGFVVAITGIENIGKGLIR
DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA
NT seq 531 nt   +upstreamnt  +downstreamnt
atgtttttccatatagtgttggaaagaaacatgcagcttcatcctcgtcactttggccgc
aatctccgtgaaaatctagtggccaagctcatgaaagatgttgaaggcacttgcagtggt
caacatgggtttgtggttgcaattacgggcatagaaaacattgggaagggcctgattcgc
gatgggacagggtttgtcacattccctgtgaagtaccagtgtgttgttttcagaccattc
aaaggagagatcttagaagctgttgttactatggtgaacaagatgggattttttgctgag
gctggtcctgttcaaatctttgtttcaaaccatttgataccggatgatatggagttccaa
tctggagatatgccaaattatacaacatcagatggatcagttaaaattcagaaagatagc
gaagttcggttaaagataattggaacccgagtggatgctactgaaattttctgcattggt
acaataaaggatgatttcttgggtgtgataaacgatcctgcgactgcttag

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