Pseudomonas muyukensis: KSS95_11410
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Entry
KSS95_11410 CDS
T07704
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmuy
Pseudomonas muyukensis
Pathway
pmuy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmuy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KSS95_11410 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmuy03400
]
KSS95_11410 (mfd)
Enzymes [BR:
pmuy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KSS95_11410 (mfd)
DNA repair and recombination proteins [BR:
pmuy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KSS95_11410 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QXH37389
LinkDB
All DBs
Position
complement(2541607..2545056)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPKLSATAGKQTWGNLPGAALSLAVAEAASTAGRFTLLLTADSQAADRLEQELRF
FAPELPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELDHGILVVPITTALHRLAPT
RFLLGSSLVLDVGQKIDVEQMRSRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKQPY
RIDLFDDEIETLRTFDPESQRSIDKVDSVRLLPAREFPMQKDEVTRFKARFRERFDVDFR
RSAIFQDLTSGIIPAGIEYYLPLFFEETATLFDYLPADTQVFSLPGVEQAAEHFWNDVRG
RYEERRGDLTRPLLPPAELFMPVEDCFARLKQWPRVVVSSEELDAGTGRERFPARALPNL
AIEAKANQPLAELANFLDQFAGRVLFTAESAGRREVLLELLERLKVRPQTVENWADFVTG
KARLAITIAPLDDGLLLEDPAIALVAESPLFGQRVMQRRRREKRGEAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPAADYATFSAGFP
FEETPDQQAAIEAVRADMLAGQPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVASAAAELAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQISSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGAQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTLLKLQAEKLGIKKV
DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPEERFNTLEAL
FERLAPQPN
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgaaactgtcggccacggccggcaaacaaacctggggcaac
ctgcccggcgcggccttgagtctggccgtcgccgaggcggccagtaccgctggtcgcttc
accctgttgctgaccgccgacagccaggccgccgaccgcctggagcaggagctgcgcttc
ttcgcgcccgaactgccggtgctgccgttccccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcgcagcgcatcgccagcctctaccggctgccggag
ctggaccacggcatcctcgtggtgccgatcaccaccgccctgcaccgcctggcgccgacg
cgcttcttgctgggcagcagcctggtgctggacgtcggccagaagatcgacgtcgagcag
atgcgcagccgcctggaagccagcggctaccgctgcgtcgacacggtgtacgagcatggc
gagttcgccgtgcgcggcgcgctgatcgacctgttccccatgggcagcaagcagccgtac
cgcatcgacctgttcgacgacgagatcgaaaccctgcgcaccttcgacccggagagccag
cgctcgatcgacaaggtcgactcggtacgcctgctgccggcccgcgagttccccatgcag
aaggacgaggtgacccgcttcaaggcgcggttccgcgaacgcttcgatgtcgacttccgg
cgcagcgcgatcttccaggacctcaccagcggcatcatcccggccgggatcgagtactac
ctgccgctgttcttcgaagaaaccgcgaccctgttcgactacctgccggccgacacccag
gtgttctcgctgcctggcgtggagcaggccgccgaacatttctggaacgatgtgcgcggg
cgctatgaagaacgccgcggcgacctgacccgcccgctgctgccgccggccgagctgttc
atgccggtggaggactgcttcgcccgcctcaagcaatggccgcgggtggtggtcagcagc
gaggaactcgacgccggcaccggtcgcgagcgcttcccggcccgcgccctgcccaacctg
gcgatcgaggccaaggccaaccagccgctggcggagctggcgaacttcctcgaccagttc
gctggccgggtgctgttcaccgccgagtccgccggccggcgcgaagtgctgctggagctg
ctcgagcgcctcaaggtacgtccgcagacggtcgagaactgggccgacttcgtcaccggc
aaggcgcgcctggcgatcaccatcgcgccgctagacgatggcctgctgctggaagacccg
gccatcgccctggttgccgaaagcccgctgttcggccaacgcgtgatgcagcgccggcgc
cgcgagaaacgcggcgaggcggccaacgacgcggtaatcaagaacctcaccgagctgcgc
gaaggcgccccggtggtgcacatcgaccatggtgtcggccgctacctgggcctggccacg
ctggagatcgacggccaggccgccgaattcctcaccctcgagtacgcagaaaacgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcgccgctgcaccggctcggctcggaagcctggcaaaaagccaagcgcaaggccgcc
gagcaagtgcgcgacgtcgccgccgagctgctcgacatctacgcccgccgcgccgcgcgc
aagggctatgccttcgccgacccggccgccgactacgccaccttcagcgccggcttcccg
ttcgaggaaacccccgaccagcaggccgccatcgaggccgtgcgcgccgacatgctcgcc
ggccagccgatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaggtggcc
atgcgcgccgccttcatcgccgtgcacagcggccgccaggtggcggtgctggtgcccacc
accctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtg
aaggtcgaagtgatgagccgcttcaagtcggccaaggaagtcgccagcgccgcggcggag
ctggccgaaggcaagatcgacatcctcatcggcacccacaagctgctgcaggacgatgtg
cgcttcaaggacctgggcctggcgatcatcgacgaggaacaccgcttcggtgtgcgccag
aaagagcagctcaaggccctgcgcagcgaggtggacatcctcaccctgactgcgacgccg
attccgcgcacgctgaacatggcggtggcgggcatgcgcgacctgtcgatcatcgccacc
ccgccggcacggcgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaggaagcgctgctgcgcgaactgctgcgcggcggccaggtgtactacctgcacaacgat
gtgaaaaccatcgagaaatgcgccgccgagctggccgaactggtccctgaagcgcgtatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccc
agcgccaacaccatcgtcatcgagcgcgccgacaagttcggcctggcccagttgcaccag
ctgcgcggccgggtcggacgcagccaccaccaggcctacgcctacctgctgacgccaccg
cgccagcagatcagcagcgatgccgagaaacgcctggaggccatcgccaacacccaggac
ctgggcgcaggcttcgttctggccaccaacgacctggagatccgcggtgccggcgaattg
ctcggcgagggccagagcgggcagatccaggccgtcggcttcaccctctacatggaaatg
ctcgagcgcgcggtcaaggccattcgcaagggtgcccagccgaacctcgagcagccgctg
ggcggcggcccggagatcaacctgcgcctgccggcgctgatccccgaggactacctgccc
gacgtgcacgcgcgcctgatcctgtacaagcgcatcgcctcggcggccgacgaagagggc
ctcaaggacctgcaggtggagatgatcgaccgcttcggcctgctgccggagccgaccaag
aacctgatgcgcctgaccctgctcaagctgcaggcagagaagctcggcatcaagaaggtc
gacgccggccccaacggcggcaagctggaattcgaggccgaaacgccggtcgacccgctg
accctgatcaagctgatccagggccagcccaagcgctacaagttcgaaggcgcgacccag
ttccgcttcctggtgccgatggaacgccccgaagaacgcttcaacaccctggaggcgctg
ttcgagcgcctcgccccacaaccgaactaa
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integrated database retrieval system
