Polaromonas naphthalenivorans: Pnap_2176
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Entry
Pnap_2176 CDS
T00459
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pna
Polaromonas naphthalenivorans
Brite
KEGG Orthology (KO) [BR:
pna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pna03019
]
Pnap_2176
Enzymes [BR:
pna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pnap_2176
Messenger RNA biogenesis [BR:
pna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Pnap_2176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
HA2_N
AAA_22
NACHT
AAA_19
T2SSE
nSTAND3
AAA_23
SRP54
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABM37484
UniProt:
A1VPA6
LinkDB
All DBs
Position
complement(2313015..2316935)
Genome browser
AA seq
1306 aa
AA seq
DB search
MLPSLSPLAITFPESLPVSAKRDDIAAALTAHQVIIVCGETGSGKTTQLPKIALALGRGK
LNYPPGQGRMIGHTQPRRIAASSVAKRIAEELKTPLGDVVGYKVRFQDRLSRDASVKLMT
DGILLAETQTDPLLRAYDTIIIDEAHERSLNIDFLLGYLRQLLPRRPDLKVIITSATIDA
QRFADYFASAKGPAPVIMVSGRMFPVEQRYRPFEESRDYGLNDAIADAVDELWLSPHSAG
DILIFLPGEREIREAADHLRKHLAHQPLTRNAEVLPLFARLSQAEQDRIFDGHSGRRIVL
ATNVAETSLTVPGIRYVIDAGTARVKRYSFRNKVEQLMVEPISQSAANQRAGRCGRVADG
ICIRLYDEPDFLGRPRFTDPEILRSSLASVILRMKSLHLGTIENFAFIEPPQGRAIADGY
QLLAELGAVNDDNELTPVGWTLAKLPLDPRVGRMILEAKDRQALDEVLVIASALSVQDVR
DRPMDKQAQADQAHAKFDDEKSEFVGFLKLWKWLGDSRGGHDATHKLTNRQYETLLRENF
VNIRRVREWRDIHSQLQAVVGEQGWHLNDKPASYEQLHLSLLCGLLGNIGLKSEEDDWYL
GARGIRFYRHPGARLSKKPGRWIVASELVETTRLFGRGIANIDPQWIEQVGGHLLKKQLL
DPHWEKKAAQVTALERATLYGLVVYNGRRVNFGRVDPVTSREIFIREALVAGNWDTKLPF
LAANEKMIAHVQDLEHKARRQDVLVDEELIYAFYDQQLPADICTGAGCESWYKTEARKQP
NLLLLTQDELMRHEAAGITTQAFPKTLRLGGVDCLATYLHEPGDARDGVTVDVPLFALNQ
VNEERCEWLVPGMLKDKIQALIKTLHQRPRSRLVPLPDTAARMAGELMQAEKFGTGSLTD
AVLKWVRDATSLDIKRGDLKLDMLPPHLFMNFRVVDEHGRQLGAGRNLGALKGELGSQAR
GAFQALAGLKNLGKAAPAPANPGKTDASAQNSASNKPSAQAGRAQTAPEKIAIKTPERYT
SWSFGELPELMEIGKGAQTLIGFPALIDLGDAVTIEVFDEPDAAAIKHRAGLRRLFSLQI
KDALKYLEKNLPDLQKTATSYMLVGRAADNSGGGTVDELRQQIIEVALDRAFLLDPLPTC
EADFKKRVDDGRGRLTLIASEVARLAGAILIEFAVAQRKIKDTKNATEAVQDAAQQLQRL
VPKKFLTTTPYGQLQHFTRYLKAITLRLEKWRADPARDAARMVELRPQEQRYWRLVAERK
GVLDARMQEYRWLLEELRVSFFAQELRTPQPVSIKRLDKLWAQLNS
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
ttgcttccttccttgtcccctctggccatcacttttcccgaatcgctgccggtttccgcc
aagcgcgacgacatcgccgcggcgctcacggcgcaccaggtcatcatcgtctgcggtgaa
accggctcgggcaaaaccacgcaactgccgaaaatcgccctggcactggggcgcggcaag
ctcaactacccgcccggacagggcaggatgatcggccacacccagccgcgccgcatcgct
gcgtccagcgtcgccaagcgcattgccgaagagctgaaaacgccgctcggcgacgtcgtt
ggctacaaggtgcgtttccaggaccggctgagccgcgatgcgtcggtcaagctgatgacc
gacggcatcttgctggccgaaacgcagaccgacccgctgctgcgcgcctacgacaccatc
atcatcgacgaggcgcacgagcgcagcctgaacatcgactttttgctcggctacctgcgc
cagctgctgccgcgccggcccgacctgaaggtcatcattacctcggcaaccatcgacgcc
cagcggttcgcggattacttcgcgtcagccaaggggccggcgccggtcatcatggtctcg
ggtcgcatgttcccggtcgagcagcgctaccgcccgttcgaggagtcgcgcgactacggc
ctgaacgacgcgattgccgatgcggtcgatgaactttggttgagcccgcacagcgcgggc
gacatcctgattttcctgcccggcgagcgcgagatccgcgaagccgccgaccacctgcgc
aagcacctggcgcaccagccgctgacgcgcaatgccgaggtgctgccgctgttcgcccgc
ctgagccaggccgagcaggaccggatttttgacggccacagcggccggcgcatcgtgctg
gcgaccaacgtggccgaaacctcattgaccgttccgggcatcagatacgtcattgacgca
ggcacggcgcgcgtcaagcgctacagtttcaggaacaaggtcgagcagctgatggtcgag
ccgatctcgcagtcggccgccaaccagcgcgcgggccgctgcggccgggtggccgacggc
atctgcatccggctgtacgacgagcccgactttctgggccggccgcgcttcaccgacccc
gagattttgcgcagttcgctggcctcggtgatcctgcgcatgaagtcgctgcacctcgga
acgattgaaaactttgccttcatcgagccgccgcagggccgcgcgattgccgacggctac
cagctgctggccgaactcggcgcggtcaatgacgacaacgaactcacgcccgtcggctgg
acgctggccaagctgccgctggacccgcgcgtcggccgcatgatcctggaggccaaggac
cggcaggcgcttgacgaggtgctggtgattgccagcgcgctgagcgtgcaggacgtgcgc
gaccggccgatggacaagcaggcgcaggccgaccaggcgcatgccaagttcgacgacgag
aagagcgaattcgtcggcttcctgaagctgtggaaatggctgggcgattcgcgcggcggg
catgacgcgacgcacaaacttacgaaccgccagtatgaaaccctgctgcgcgagaacttc
gtcaacatccgtcgcgtgcgcgaatggcgcgacatccattcgcaattgcaggcggtggtc
ggcgagcagggctggcacctcaatgacaagccggccagctacgagcagctgcatttgtcg
ctgctgtgcggcctgctgggcaacatcggcctgaaaagcgaagaggacgactggtacctg
ggcgcgcgcggcatccggttttaccgccaccccggcgcgcggctcagcaagaagccgggc
cgctggatcgtagcaagcgagctggtcgaaaccacgcgcctgtttggccggggcatcgcc
aacatcgacccgcagtggatcgagcaggtcggcggccatcttttgaagaagcagctgctc
gacccgcactgggagaaaaaagccgcgcaggtgaccgcgctggagcgcgccacgctgtac
ggcctggtggtttacaacggccggcgcgtcaactttggccgggtcgatccggtgacctcg
cgcgaaatcttcatccgcgaggcgctggtggccggcaactgggacacgaaactgcccttc
ctggccgccaacgaaaagatgattgcccatgtccaggacctggagcacaaggcgcgccgg
caggacgtgctggtcgatgaggagctgatctacgctttctacgaccagcaactgccggcc
gacatctgcaccggcgcgggctgcgaaagctggtacaaaaccgaagccagaaagcagccg
aatctgctgcttttgacgcaagacgagctgatgcgccacgaagcggccggcatcacgacc
caggcttttccgaaaacgctgcggctgggcggcgtcgattgcctggcgacctacctgcac
gagcccggcgacgcgcgcgacggcgtgaccgtcgatgtgccgctgttcgcgctgaaccag
gtcaacgaggagcgctgcgaatggctggtgcccggcatgctgaaggacaagatccaggcg
ctgatcaagaccctgcaccagcgcccgcgctcgcgcctggtgccgctgcccgacacggcc
gcgcgcatggccggggagctgatgcaggccgagaagttcggcaccggctcgctgaccgac
gcggtcttgaagtgggtgcgcgatgccacgtcgctcgacatcaagcgcggcgacttgaag
ctggacatgctgccgccacacctgttcatgaactttcgcgtggtcgatgagcacgggcgc
cagctgggcgcgggccgcaacctgggcgcgctcaagggcgagctgggctcgcaagcgcgc
ggggcttttcaggcgctggcggggctgaagaacctgggcaaggcggcgcctgcacccgcc
aatccgggaaaaaccgatgcttcagcgcagaattcagcatcaaataagccttctgcgcaa
gcaggacgggcgcaaacagctcctgaaaagatagcaattaaaacaccggagcgctacacc
agctggagctttggcgaattgcccgagctgatggaaatcggcaagggcgcgcagaccttg
attggttttccggcgctgatcgacctgggcgatgcggtgaccatcgaggtgttcgacgag
cccgatgcagccgccatcaagcaccgcgccggcttgcgccgcctgttttcgctgcagatc
aaggacgcgctgaaatacctggaaaaaaacctgcccgacctgcagaaaacggcgacttcc
tacatgctggtgggccgcgcggccgacaactcgggcggcggcacggtggacgagctgcgc
cagcagatcatcgaggtggcgctggaccgggcgttcttgctcgatccgctgccgacctgc
gaggccgacttcaagaaacgggtggacgacggacgcggccgcctgacgctgattgccagc
gaggtggcgcgcctggccggcgccatcctgatcgagttcgccgtggcgcagcgaaagatc
aaggacacgaaaaacgcgacggaagcggtgcaggatgccgctcagcagttgcagcgactg
gtgcccaagaagttcctgaccaccacgccttacgggcagttgcagcatttcacccgctac
ctcaaggcgatcaccctgcggctcgaaaagtggcgtgccgacccggccagggacgcagcc
cgcatggttgaactgcggccgcaggagcagcgctactggcgcttggtggccgagcgcaag
ggcgtactggatgcgcgcatgcaggaataccgctggctgctcgaagagctgcgggtgagc
ttcttcgcgcaggaactgcgaacgccgcagccggtcagcatcaagcggctggacaagctc
tgggcgcagctcaacagctga
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