KEGG   Pseudomonas nunensis: NK667_11890
Entry
NK667_11890       CDS       T08997                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pnb  Pseudomonas nunensis
Pathway
pnb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pnb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    NK667_11890 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pnb03400]
    NK667_11890 (ligD)
Enzymes [BR:pnb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NK667_11890 (ligD)
DNA repair and recombination proteins [BR:pnb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NK667_11890 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: UTO17012
LinkDB
Position
2774110..2776629
AA seq 839 aa
MAKTVSEYTRKRNFEITSEPPEAAPAKRGKKTPSALRFVIQKHDARNLHYDFRLELDGTL
KSWAVPKGPSLDPTQKRLAVHVEDHPISYGTFEGSIPEGQYGAGDVIVWDHGVWQPIGDP
KETYKAGKLKFTLIGEKLAGDWALVRTHLRGSGDKEQWLLIKEKDQQARPISEFDVVAEL
PKSVLSNATVGDKTKKASSKSVKKPKAAKPKPTALPEQFSPQLATLMDKAPAGDWRYEIK
FDGYRILARIDNGKVRLLTRNGHDWTAKLPLQAKALAEMKLDGSWLDGEVVVLNDKGFPD
FQGLQNAFEIGRSVDIIYFLFDAPFLHGVDQREMPVEDRRAALKKALGRKSRQILRFSEA
FTAKHQDIVESACALSLEGVIGKRAGSPYVSRRSPDWIKLKCRLRQEFVIIGYTAPQGSR
SGFGALLLGVYDDKGLLYAGRVGTGFNQANLKLFHGQLQKIERKTSPLDKPLTAAQARGV
HWVEPTLVCEAEFAEWTREGVVRQAAFIAMRTDKPATEIVREQPQSPKASKPVTEKKTSS
KDSTVAGVKITHPERVIDKDSGTQKLELVQFYESISKWILPFLRDRPVSLLRAPEGVEGE
QFFQKHAERLAIPNIKHLDPKIDLGHARLMEIDSVQALIGAAQMGTIELHTWGATTDKIE
TPDLFVLDLDPDPALPWKSMVEATQLTLSVLDEIGLEAFLKTSGGKGMHIIVPLARKDDW
DTVKAFAKAIAQFMAQQLPERISATMGPKNRVGKIFVDYLRNTRGASTVSAYSVRARPGL
PVSVPIARDELTALHGSQEWTVANLLERLEGLKEDPWAGYANRQKITAKMWKQLGAKKP
NT seq 2520 nt   +upstreamnt  +downstreamnt
atggctaaaacggtgagtgaatacacacgcaaacgcaacttcgagatcacttcagagccg
cctgaagcagcgccggccaagcgcggcaagaaaacgccttcggccttgcgtttcgtgatc
cagaagcatgatgcgcgcaatttgcattacgactttcgcctggaactcgatggcaccctg
aaaagctgggccgtgcccaaaggcccgagcctggacccgacgcaaaagcgtctggcggtg
catgtcgaggaccatccgatcagttacggcaccttcgagggcagcatccccgagggtcag
tacggcgccggggatgtgattgtctgggatcacggtgtctggcaaccgatcggtgacccg
aaagaaacctacaaggccggcaaactgaaattcaccctgatcggtgaaaagctcgccggt
gactgggcattggtgcgtacccatctgcgcggcagtggcgacaaggagcaatggttgctg
atcaaggaaaaggatcaacaagcgcggccgatcagcgagtttgacgtggtcgccgagttg
cccaaaagcgtattgagcaatgcgaccgtgggcgacaaaaccaaaaaggccagtagcaaa
tccgtcaaaaagcccaaagcagccaaacccaaacccaccgccctgcccgaacaattcagc
ccgcaactggccacgctgatggacaaggcaccggccggcgattggcgctatgaaatcaag
ttcgacggctaccggatcctcgcccggatcgacaatggcaaggtgcgactgctgacccgc
aatggccacgactggacggccaaactgcccctgcaggccaaggccctggccgagatgaaa
ctcgacggcagttggctcgatggcgaagtggtggtgctcaacgacaaaggcttcccggac
ttccagggattgcagaacgcgttcgaaatcggccgctccgtggacatcatttatttcctg
ttcgacgcaccgttcctgcatggcgtcgatcagcgtgagatgccggtagaagaccgccgc
gcggcgctgaaaaaagccctgggtcgcaagtcccggcaaatcctgcgcttctccgaggcc
tttaccgccaaacatcaagacatcgtagagagtgcctgtgccttgtcactggaaggcgtc
atcggcaaacgcgctggcagcccttacgtgtcacgccgcagtccggactggatcaagctc
aaatgccgcttgcgtcaggaattcgtgatcatcggctatacggcgccgcagggttcgcgc
agtggtttcggcgccctgctgctgggggtttacgacgataagggactgctctatgcaggg
cgcgttggcaccgggttcaatcaggccaacctcaagttgtttcatggccaattgcagaag
atcgagcgcaagacctcaccgttggacaaaccgttgaccgccgctcaggcccggggtgtg
cactgggtcgagccgacgctggtgtgcgaagccgagtttgccgagtggacccgcgaaggt
gtggtccggcaagcggcgtttatcgccatgcgcaccgacaaaccggcgacggagattgtg
cgtgaacagccgcagtcccccaaggcgagcaaacccgtgaccgagaagaaaaccagcagc
aaggacagcaccgtcgccggggtcaagatcacgcaccccgagcgtgtcatcgacaaggat
agcggcacgcagaaactcgaattggtgcagttctacgaaagcatcagcaaatggatcctg
ccgtttctgcgcgaccggccggtgtcgttgttgcgggcgccggaaggcgtcgaaggcgaa
cagttcttccagaaacacgccgagcgcctggcgatccccaatatcaagcacctggacccg
aagatcgaccttggccacgcgcgactgatggaaatcgactccgtccaggcactgatcggc
gcggcgcaaatgggcaccatcgagctgcatacctggggcgcgaccacggacaagattgaa
accccggacttgttcgtcctcgacctcgacccagatccggcgctcccatggaaaagcatg
gttgaggccacgcaactgaccctgtcggtgctggatgaaatcggcctggaggcgttcttg
aaaaccagcggtggcaaaggcatgcacatcatcgtgccgctggcgcgcaaggatgactgg
gacacggtcaaagcgttcgccaaagccatcgcgcagtttatggcgcagcaactgccggag
cggatcagcgcgaccatgggcccgaaaaaccgggtcggcaagattttcgtcgattacctg
cgcaacacccgtggggccagtacggtgtcggcgtattcggtgcgggcgcggccggggtta
ccggtatcggtgccgattgcgcgggatgagttgacggcgctgcatggttcgcaggaatgg
acggtggccaatttgctggagcgactggagggattgaaagaggatccgtgggcggggtat
gcgaatcggcagaagattacggcgaagatgtggaagcagttaggggccaagaagccttag

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